EpiCompare: R package for the comparison and quality control of epigenomic peak files
EpiCompare: R package for the comparison and quality control of epigenomic peak files
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EpiCompare：用于表观基因组峰文件比较和质量控制的 R 包
DOI：
10.1101/2022.07.22.501149
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发表时间：
2022
期刊：
影响因子：
--
通讯作者：
Choi S
中科院分区：
文献类型：
--
作者：
Choi S
SummaryEpiCompare结合了各种下游分析工具来比较、质量控制和基准测试不同的表观基因组数据集。该软件包只需要用户输入最少的内容，只需一行代码即可运行，并在单个交互式HTML报告中提供所有分析结果。EpiCompare可以在Bioconductor（≥ v3.15）上获得：https：//bioconductor.org/packages/release/bioc/html/EpiCompare.html;所有源代码都可以通过GitHub公开获得：https：//github.com/neurogenomics/EpiCompare;文档网站https：//neurogenomics.github.io/EpiCompare; EpiCompare DockerHub存储库：https://hub.docker.com/repository/docker/neurogenomicslab/epicompare。
SummaryEpiCompare combines a variety of downstream analysis tools to compare, quality control and benchmark different epigenomic datasets. The package requires minimal input from users, can be run with just one line of code and provides all results of the analysis in a single interactive HTML report. EpiCompare thus enables downstream analysis of multiple epigenomic datasets in a simple, effective and user-friendly manner.Availability and implementationEpiCompare is available on Bioconductor (≥ v3.15): https://bioconductor.org/packages/release/bioc/html/EpiCompare.html; all source code is publicly available via GitHub: https://github.com/neurogenomics/EpiCompare; documentation website https://neurogenomics.github.io/EpiCompare; and EpiCompare DockerHub repository: https://hub.docker.com/repository/docker/neurogenomicslab/epicompare.
影响因子：
3.6
作者：
Hannon, Eilis;Marzi, Sarah J.;Mill, Jonathan
通讯作者：
Mill, Jonathan
影响因子：
8.8
作者：
Roussos P;Mitchell AC;Voloudakis G;Fullard JF;Pothula VM;Tsang J;Stahl EA;Georgakopoulos A;Ruderfer DM;Charney A;Okada Y;Siminovitch KA;Worthington J;Padyukov L;Klareskog L;Gregersen PK;Plenge RM;Raychaudhuri S;Fromer M;Purcell SM;Brennand KJ;Robakis NK;Schadt EE;Akbarian S;Sklar P
通讯作者：
Sklar P