Parallel hardware for sequence comparison and alignment

Parallel hardware for sequence comparison and alignment
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用于序列比较和比对的并行硬件

DOI:
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发表时间:
1996
期刊:
Comput. Appl. Biosci.
影响因子:
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通讯作者:
R. Hughey
R. Hughey
中科院分区:
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文献类型:
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作者:
R. Hughey

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序列比较是计算生物学中一个重要的研究工具,它基于一个简单的O(n2)算法,可以很容易地映射到处理器的线性阵列。本文回顾并比较了通用超级计算机和单用途可重构和可编程协处理器上的高性能序列分析。从公布的性能数字比较硬件的困难也被注意到。
Sequence comparison, a vital research tool in computational biology, is based on a simple O(n2) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose reconfigurable, and programmable co-processors. The difficulty of comparing hardware from published performance figures is also noted.
DOI: 10.1006/jmbi.1994.1104
发表时间: 1994-02-04
影响因子: 5.6
作者:
KROGH, A;BROWN, M;HAUSSLER, D
通讯作者: HAUSSLER, D