Automated Generation of Animl Documents by Analytical Instruments
Automated Generation of Animl Documents by Analytical Instruments
复制标题
分析仪器自动生成动物文档
DOI：
10.1016/j.jala.2006.05.013
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发表时间：
2006
期刊：
影响因子：
--
通讯作者：
G. Kramer
中科院分区：
文献类型：
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作者：
Alexander Roth;R. Jopp;Reinhold Schäfer;G. Kramer
该项目的范围包括存储通用实验室设备在分析实验处理过程中产生的结果数据、描述检查方法的数据以及使用分析信息标记语言(AnIML)标准的审计跟踪。该项目还考虑了自动化实验室环境中通用设备的集成。AnIML是即将推出的ASTM标准格式，用于记录分析数据和工作流程以及附带的实验元数据。使这一标准适应现有的工具，目前需要人工干预。该项目的目标是在生成AnIML文件时尽可能多地实现步骤的自动化，这些文件的所有基本信息都是由分析仪器直接提供的。具有这种功能的软件可以集成到分析仪器中，或者驻留在与仪器挂钩的固件盒中。这将允许平稳过渡到新标准，即使在复杂的现有环境中也是如此。在展示该方法的可行性之前，必须满足一组前提条件。我们在这里描述的原型应用程序集成了使用实验室设备控制接口规范、对象管理组织(LECIS OMG)设备能力数据集的仪器的通用描述。有关设备命令和设备数据流及其语义的信息可以在那里找到。实验的元数据由测试订单提供。在这两种情况下，XML模式都包含信息语法。使用这些信息，我们开发了一个通用接口，它以语义映射结果流，然后将其转换为AnIML文档，而无需手动干预。目前，我们已经完成并测试了原型实现，并正在努力支持LECIS OMG和ASTM AnIML标准的全部功能。(Jala 2006；11：247-53)
The scope of this project covers the storing of result data produced by generic laboratory devices during processing of analytical experiments, the data describing the examination methods, and the audit trail using the Analytical Information Markup Language (AnIML) standard. This project also considers the integration of generic devices in automated laboratory environments.AnIML is an upcoming ASTM standard format for recording analytical data and workflows with accompanying experimental metadata. Adapting this standard to existing instruments currently requires manual intervention. The goal of this project is to automate as many steps as possible in generating an AnIML document with all its essential information supplied directly by the analytical instrument. Software with such functionality could be integrated into analytical instruments or reside in firmware boxes hooked to the instruments. This would allow a smooth transition to the new standard even in complex existing environments. A set of prerequisites have to be fulfilled before the feasibility of this approach can be shown.The prototype application we describe here integrates the generic description of an instrument using the Laboratory Equipment Control Interface Specification, Object Management Group (LECIS OMG) Device Capability Dataset. Information about the device's commands and the device's data stream with its semantics can be found there. The experiment's metadata are provided by the test order. In both cases, XML schemas contain the information syntax. Using this information, we developed a generic interface that maps the result stream semantically and then transforms it into an AnIML document without manual intervention. At this time, we have completed and tested a prototype implementation and are working to support the full functionality of both the LECIS OMG and the ASTM AnIML standards. (JALA 2006;11:247–53)