Supplemental Figure 2
Supplemental Figure 2
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DOI：
10.5061/dryad.8mc79/19
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发表时间：
2014-08
期刊：
影响因子：
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通讯作者：
B. Mimee;Marc‐Olivier Duceppe;Pierre-Yves Véronneau;Joël Lafond-Lapalme;Martine Jean;François Belzile
中科院分区：
文献类型：
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作者：
B. Mimee;Marc‐Olivier Duceppe;Pierre-Yves Véronneau;Joël Lafond-Lapalme;Martine Jean;François Belzile
在ApeKI文库的不同参数值下，UNEAK和PoPoolation2管道保留的来自23个全球罗氏大轮虫种群的SNPs的数量。‘maf’是最低等位基因频率；‘minCov’是接受SNP所需的最小读数/位点/群体数；‘MNC’是必须对某个基因座得分才能接受的群体的最低比例。Poolation2不允许缺少数据(MNC=1.0)。*当最低等位基因频率设置为5%(MAF=0.05)时，UNEAK识别的SNPs数量不受‘MNC’值的影响。
Number of SNPs retained by UNEAK and PoPoolation2 pipelines at different parameter values on an ApeKI library from 23 worldwide populations of Globodera rostochiensis. ‘MAF’ is the minimum allele frequency; ‘minCov’ is the minimum number of reads/locus/population required to accept a SNP; ‘mnC’ is the minimum proportion of populations in which a locus must have been scored to be accepted. PoPoolation2 does not allow missing data (mnC = 1.0). *The number of SNPs identified by UNEAK was not influenced by the ‘mnC’ value when the minimum allele frequency was set to 5% (MAF = 0.05).