CellML metadata standards, associated tools and repositories
CellML metadata standards, associated tools and repositories
复制标题
DOI：
10.1098/rsta.2008.0310
复制
发表时间：
2009-05-28
期刊：
影响因子：
5
通讯作者：
Yu, Tommy
中科院分区：
文献类型：
--
作者：
Beard, Daniel A.;Britten, Randall;Yu, Tommy
编码数学模型的标准的发展是有兴趣了解多尺度生理过程的科学家之间的模型构建和模型共享的重要组成部分。CellML提供了这样一个标准，特别是对于基于生物物理机制的模型，并且在CellML模型库中现在有大量的模型可用。然而，迫切需要扩展当前的CellML元数据标准，以提供模型的生物和生物物理注释，以促进模型共享、自动化模型简化和与生物数据库的连接。本文对CellML元数据的一些新进展进行了广泛的概述，并提供了从CellML网站获得的进一步方法细节的链接。
The development of standards for encoding mathematical models is an important component of model building and model sharing among scientists interested in understanding multi-scale physiological processes. CellML provides such a standard, particularly for models based on biophysical mechanisms, and a substantial number of models are now available in the CellML Model Repository. However, there is an urgent need to extend the current CellML metadata standard to provide biological and biophysical annotation of the models in order to facilitate model sharing, automated model reduction and connection to biological databases. This paper gives a broad overview of a number of new developments on CellML metadata and provides links to further methodological details available from the CellML website.