A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.
A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.
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DOI：
10.4137/ebo.s21501
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发表时间：
2015
期刊：
影响因子：
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通讯作者：
O'Leary MA
中科院分区：
文献类型：
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作者：
Miller MA;Schwartz T;Pickett BE;He S;Klem EB;Scheuermann RH;Passarotti M;Kaufman S;O'Leary MA
CIPRES Science Gateway是一个社区Web应用程序，它提供对运行在大型计算资源上的一组并行树推理和多个序列比对代码的公共访问。这些资源由NSF极端科学和工程发现环境(XSEDE)项目免费提供给用户。在这里，我们描述CIPRES RESTful应用程序编程器接口(CRA)，这是一种Web服务，提供对CIPRES Science Gateway当前提供的所有资源和服务的编程访问。软件开发人员可以使用CRA来扩展他们的Web或桌面应用程序，以包括在XSEDE上运行MR Bayes、Beast、RAxML、MAFFT和其他计算密集型算法的能力。CRA还使具备一般脚本技能的个人可以使用cURL或任何脚本语言从命令行访问相同的工具。本报告描述了CRA及其在三个网络应用程序(流感研究数据库-www.fludb.org、病毒病原体资源-www.viprbrc.org和MorPhoBank-www.morobank.org)中的使用。注册用户可以在https://cipresrest.sdsc.edu/cipresrest/v1；上免费访问《证书颁发机构》，支持文档和注册工具可在https://www.phylo.org/restusers.上获得
The CIPRES Science Gateway is a community web application that provides public access to a set of parallel tree inference and multiple sequence alignment codes run on large computational resources. These resources are made available at no charge to users by the NSF Extreme Science and Engineering Discovery Environment (XSEDE) project. Here we describe the CIPRES RESTful application programmer interface (CRA), a web service that provides programmatic access to all resources and services currently offered by the CIPRES Science Gateway. Software developers can use the CRA to extend their web or desktop applications to include the ability to run MrBayes, BEAST, RAxML, MAFFT, and other computationally intensive algorithms on XSEDE. The CRA also makes it possible for individuals with modest scripting skills to access the same tools from the command line using curl, or through any scripting language. This report describes the CRA and its use in three web applications (Influenza Research Database – www.fludb.org, Virus Pathogen Resource – www.viprbrc.org, and MorphoBank – www.morphobank.org). The CRA is freely accessible to registered users at https://cipresrest.sdsc.edu/cipresrest/v1; supporting documentation and registration tools are available at https://www.phylo.org/restusers.