Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes
Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes
复制标题
DOI：
10.1093/bioinformatics/16.5.484
复制
发表时间：
2000-05-01
期刊：
影响因子：
5.8
通讯作者：
Upton, C
中科院分区：
文献类型：
--
作者：
Hiscock, D;Upton, C
病毒基因组数据库（VGDB）包含来自15个完整测序的大型（> 100 kb）病毒基因组（2847个基因）的基因和预测蛋白质序列的详细信息。存储的数据包括DNA序列、蛋白质序列、GenBank和用户输入的注释、分子量（MW）、等电点（pI）、氨基酸含量、A+T%、核苷酸频率、二核苷酸频率和密码子使用。VGDB是一个mySQL数据库，具有用户友好的JAVA GUI。查询结果可以很容易地按任何单独的参数进行排序。可用性：软件和其他数字和信息可在http://athena.bioc.uvic.ca/genomes/index.html.Contact：cupton@uvic.ca
The Viral Genome DataBase (VGDB) contains detailed information of the genes and predicted protein sequences from 15 completely sequenced genomes of large (> 100 kb) viruses (2847 genes). The data that is stored includes DNA sequence, protein sequence, GenBank and user-entered notes, molecular weight (MW), isoelectric point (pI), amino acid content, A+T%, nucleotide frequency dinucleotide frequency and codon use. The VGDB is a mySQL database with a user-friendly JAVA GUI. Results of queries can be easily sorted by any of the individual parameters.Availability: The software and additional figures and information are available at http://athena.bioc.uvic.ca/genomes/index.html.Contact: cupton@uvic.ca