Assessment of transparency indicators across the biomedical literature: How open is open?
Assessment of transparency indicators across the biomedical literature: How open is open?
复制标题
生物医学文献中透明度指标的评估：开放程度如何？
DOI：
10.1371/journal.pbio.3001107
复制
发表时间：
2021-03
期刊：
影响因子：
9.8
通讯作者：
Ioannidis JPA
中科院分区：
文献类型：
--
作者：
Serghiou S;Contopoulos-Ioannidis DG;Boyack KW;Riedel N;Wallach JD;Ioannidis JPA
最近对科学可重复性的关注导致了一些呼吁，要求更开放和透明的研究实践，并随着时间的推移监测潜在的改进。然而，由于每周都有数万篇新的生物医学文章发表，手动绘制和监控透明度的变化是不现实的。我们提出了一种开源的自动化方法来识别5个透明度指标（数据共享，代码共享，利益冲突披露，资金披露和协议注册），并将其应用于PubMed Central（PMC）上275万篇文章的整个开放获取生物医学文献。我们的研究结果表明，在某些方面（例如，利益冲突[COI]披露和资金披露），但不是其他（例如，协议注册和代码共享）领域的透明度，并绘制跨科学领域、国家、期刊和出版商的透明度图。这项工作使我们能够创建一个大型的、综合的、公开的数据库，以加快进一步监测、理解和促进科学透明度和可重复性的努力。这项研究使用新颖的开源自动化工具来监测PubMed Central上所有275万篇开放获取文章的透明度，发现不同的学科，期刊和出版商随着时间的推移在不同程度上遵守透明度原则。
Recent concerns about the reproducibility of science have led to several calls for more open and transparent research practices and for the monitoring of potential improvements over time. However, with tens of thousands of new biomedical articles published per week, manually mapping and monitoring changes in transparency is unrealistic. We present an open-source, automated approach to identify 5 indicators of transparency (data sharing, code sharing, conflicts of interest disclosures, funding disclosures, and protocol registration) and apply it across the entire open access biomedical literature of 2.75 million articles on PubMed Central (PMC). Our results indicate remarkable improvements in some (e.g., conflict of interest [COI] disclosures and funding disclosures), but not other (e.g., protocol registration and code sharing) areas of transparency over time, and map transparency across fields of science, countries, journals, and publishers. This work has enabled the creation of a large, integrated, and openly available database to expedite further efforts to monitor, understand, and promote transparency and reproducibility in science. This study uses novel open source automated tools to monitor transparency across all 2.75 million open access articles on PubMed Central, discovering that different disciplines, journals and publishers abide by principles of transparency to varying degrees over time.
登录
查看更多内容
影响因子：
2.9
作者：
Catala-Lopez, Ferran;Caulley, Lisa;Moher, David
通讯作者：
Moher, David
科学标准。促进开放的研究文化。
DOI：
10.1126/science.aab2374
发表时间：
2015-06-26
期刊：
Science (New York, N.Y.)
影响因子：
--
作者：
Nosek BA;Alter G;Banks GC;Borsboom D;Bowman SD;Breckler SJ;Buck S;Chambers CD;Chin G;Christensen G;Contestabile M;Dafoe A;Eich E;Freese J;Glennerster R;Goroff D;Green DP;Hesse B;Humphreys M;Ishiyama J;Karlan D;Kraut A;Lupia A;Mabry P;Madon TA;Malhotra N;Mayo-Wilson E;McNutt M;Miguel E;Paluck EL;Simonsohn U;Soderberg C;Spellman BA;Turitto J;VandenBos G;Vazire S;Wagenmakers EJ;Wilson R;Yarkoni T
通讯作者：
Yarkoni T
影响因子：
5.8
作者：
Menke J;Roelandse M;Ozyurt B;Martone M;Bandrowski A
通讯作者：
Bandrowski A
影响因子：
39.2
作者：
Collins, Gary S.;Reitsma, Johannes B.;Moons, Karel G. M.
通讯作者：
Moons, Karel G. M.
影响因子：
17.1
作者：
Goodman, Steven N.;Fanelli, Daniele;Ioannidis, John P. A.
通讯作者：
Ioannidis, John P. A.