A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing.
A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing.
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DOI：
10.1093/database/bax096
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发表时间：
2018-01-01
期刊：
影响因子：
--
通讯作者：
Rambold G
中科院分区：
文献类型：
--
作者：
Triebel D;Reichert W;Bosert S;Feulner M;Okach DO;Slimani A;Rambold G
在实地取样生物和环境凭证是相当具有挑战性的，特别是在生境条件不利和需要同时处理各种活动的情况下。这里描述的工作流包括五个程序步骤，这些步骤导致专业采样和生成普遍可识别的数据。在准备现场活动时，需要用通用唯一标识符(UUID)- qr码标记样品容器。在收集地点，使用GNSS（分别支持gps的智能手机或相机）对贴有标签的容器、取样材料和附加的补充信息进行成像。随后在现场站点或实验室实现图像处理、标记和数据存储为CSV文本文件。为此，使用新实现的工具DiversityImageInspector （URL: http://diversityworkbench.net/Portal/DiversityImageInspector）。它解决了在这种情况下图像和数据的综合处理，包括从图像内容中提取qr编码的UUID以及从Exif图像标题中提取地理数据和时间信息。将生成的数据文件导入关系数据库或其他类型的数据管理系统是可选的，但建议这样做。如果应用了导入，则可能由具有兼容模式的数据转换工具指导，如下所述。本文还讨论了这种新方法对虚拟研究环境和数据出版网络的影响。数据库地址：http://diversityworkbench.net/Portal/DiversityImageInspector
Sampling of biological and environmental vouchers in the field is rather challenging, particularly under adverse habitat conditions and when various activities need to be handled simultaneously. The workflow described here includes five procedural steps, which result in professional sampling and the generation of universally identifiable data. In preparation for the field campaign, sample containers need to be labelled with universally unique identifier (UUID)-QR-codes. At the collection site, labelled containers, sampled material and attached supplementary information are imaged using a GNSS- respectively GPS-enabled smartphone or camera. Image processing, tagging and data storage as CSV text file is subsequently achieved in a field station or laboratory. For this purposes, the newly implemented tool DiversityImageInspector (URL: http://diversityworkbench.net/Portal/DiversityImageInspector) is used. It addresses combined image and data processing in such a context including the extraction of the QR-coded UUID from the image content and the extraction of geodata and time information from the Exif image header. The import of the resulting data files into a relational database or other kind of data management systems is optional but recommended. If applied, the import might be guided by a data transformation tool with compliant schema as described here. The new approach is discussed also with regard to implications for virtual research environments and data publication networks. Database URL: http://diversityworkbench.net/Portal/DiversityImageInspector
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影响因子：
0.2
作者：
White, Ethan P.;Baldridge, Elita;Supp, Sarah R.
通讯作者：
Supp, Sarah R.
影响因子：
1.3
作者：
Guralnick, Robert P.;Cellinese, Nico;Page, Roderic D. M.
通讯作者：
Page, Roderic D. M.
DOI：
10.3390/s16091461
发表时间：
2016-09-09
期刊：
Sensors (Basel, Switzerland)
影响因子：
--
作者：
Deusdado P;Guedes M;Silva A;Marques F;Pinto E;Rodrigues P;Lourenço A;Mendonça R;Santana P;Corisco J;Almeida SM;Portugal L;Caldeira R;Barata J;Flores L
通讯作者：
Flores L
影响因子：
9.8
作者：
Wilkinson MD;Dumontier M;Aalbersberg IJ;Appleton G;Axton M;Baak A;Blomberg N;Boiten JW;da Silva Santos LB;Bourne PE;Bouwman J;Brookes AJ;Clark T;Crosas M;Dillo I;Dumon O;Edmunds S;Evelo CT;Finkers R;Gonzalez-Beltran A;Gray AJ;Groth P;Goble C;Grethe JS;Heringa J;'t Hoen PA;Hooft R;Kuhn T;Kok R;Kok J;Lusher SJ;Martone ME;Mons A;Packer AL;Persson B;Rocca-Serra P;Roos M;van Schaik R;Sansone SA;Schultes E;Sengstag T;Slater T;Strawn G;Swertz MA;Thompson M;van der Lei J;van Mulligen E;Velterop J;Waagmeester A;Wittenburg P;Wolstencroft K;Zhao J;Mons B
通讯作者：
Mons B
影响因子：
3.3
作者：
Triebel, Dagmar;Hagedorn, Gregor;Rambold, Gerhard
通讯作者：
Rambold, Gerhard