Heatmapper: web-enabled heat mapping for all.
Heatmapper: web-enabled heat mapping for all.
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DOI：
10.1093/nar/gkw419
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发表时间：
2016-07-08
影响因子：
14.9
通讯作者：
Wishart DS
中科院分区：
文献类型：
--
作者：
Babicki S;Arndt D;Marcu A;Liang Y;Grant JR;Maciejewski A;Wishart DS
Heatmapper是一个免费提供的Web服务器，允许用户通过易于使用的图形界面以热图形式交互可视化他们的数据。与现有的非商业热图包不同，热图包要么缺乏图形界面，要么只专门用于一到两种热图，Heatmapper是一个多功能工具，允许用户为许多不同的数据类型和应用程序轻松创建各种热图。更具体地说，Heatmapper允许用户生成、聚集和可视化：(I)来自转录组、蛋白质组和代谢组实验的基于表达的热图；(Ii)成对距离图；(Iii)相关图；(Iv)图像叠加热图；(V)纬度和经度热图和(Vi)地缘政治(全息)热图。Heatmapper提供了许多简单直观的定制选项，可以方便地调整每个热图的外观和绘图参数。Heatmapper还允许用户通过将光标悬停在每个热图单元格上或使用可搜索/可排序的数据表视图来交互地浏览其数值数据值。热图数据可以轻松地以文本、Excel或制表符分隔的格式化表格上传到Heatmapper，生成的热图图像可以轻松下载为常见格式，包括PNG、JPG和PDF。Heatmapper旨在吸引广泛的用户，包括分子生物学家、结构生物学家、微生物学家、流行病学家、环境科学家、农业/林业科学家、鱼类和野生生物学家、气候学家、地质学家、教育工作者和学生。热映射程序可在http://www.heatmapper.ca.上获得
Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Unlike existing non-commercial heat map packages, which either lack graphical interfaces or are specialized for only one or two kinds of heat maps, Heatmapper is a versatile tool that allows users to easily create a wide variety of heat maps for many different data types and applications. More specifically, Heatmapper allows users to generate, cluster and visualize: (i) expression-based heat maps from transcriptomic, proteomic and metabolomic experiments; (ii) pairwise distance maps; (iii) correlation maps; (iv) image overlay heat maps; (v) latitude and longitude heat maps and (vi) geopolitical (choropleth) heat maps. Heatmapper offers a number of simple and intuitive customization options for facile adjustments to each heat map's appearance and plotting parameters. Heatmapper also allows users to interactively explore their numeric data values by hovering their cursor over each heat map cell, or by using a searchable/sortable data table view. Heat map data can be easily uploaded to Heatmapper in text, Excel or tab delimited formatted tables and the resulting heat map images can be easily downloaded in common formats including PNG, JPG and PDF. Heatmapper is designed to appeal to a wide range of users, including molecular biologists, structural biologists, microbiologists, epidemiologists, environmental scientists, agriculture/forestry scientists, fish and wildlife biologists, climatologists, geologists, educators and students. Heatmapper is available at http://www.heatmapper.ca.