Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes
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DOI：
10.1093/nar/gkl1004
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发表时间：
2007-01-01
影响因子：
14.9
通讯作者：
Sugawara, Hideaki
中科院分区：
文献类型：
--
作者：
Hirahata, Masaki;Abe, Takashi;Sugawara, Hideaki
Genome Information Broker for Viruses（GIB-V）是一个全面的病毒基因组/片段数据库。我们从日本DNA数据库（DDBJ）、EMBL和GenBank的国际核苷酸序列数据库合作组织（INSDC，http：//www.insdc.org/）中提取了18418个完整的病毒基因组/片段，并将它们存储在我们的系统中。已登记病毒的列表根据分类法按层次排列。可以对GIB-V中存储的任何病毒的基因组/片段数据或生物学特征进行关键字搜索。GIB-V配备了BLAST搜索功能，搜索结果以图形或列表形式显示。此外，BLAST结果可以与DDBJ的ClustalW功能一起在线使用。所有可用的病毒基因组/片段数据都可以通过GIB-V下载功能收集。GIB-V可以在http://gib-v.genes.nig.ac.jp/上免费访问。
Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org/) by DNA Data Bank of Japan (DDBJ), EMBL and GenBank and stored them in our system. The list of registered viruses is arranged hierarchically according to taxonomy. Keyword searches can be performed for genome/segment data or biological features of any virus stored in GIB-V. GIB-V is equipped with a BLAST search function, and search results are displayed graphically or in list form. Moreover, the BLAST results can be used online with the ClustalW feature of the DDBJ. All available virus genome/segment data can be collected by the GIB-V download function. GIB-V can be accessed at no charge at http://gib-v.genes.nig.ac.jp/.