Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets.
Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets.
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DOI：
10.1002/cpbi.30
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发表时间：
2017-09-13
影响因子：
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通讯作者：
Vizcaino, Juan Antonio
中科院分区：
文献类型：
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作者：
Jarnuczak, Andrew F;Vizcaino, Juan Antonio
ProteomeXchange (PX) 联盟是世界领先的基于质谱 (MS) 的蛋白质组学存储库的统一框架。目前的成员包括 PRIDE 数据库（英国）、PeptideAtlas/PASSEL、MassIVE（美国）和 jPOST（日本）。该联盟对全球公共蛋白质组学数据的提交和传播进行标准化。这是通过实施通用数据提交指南并强制每个成员执行元数据要求来实现的。此外，成员使用公共标识符空间。每个数据集都会收到一个唯一的 (PXD) 登录号，并且在相关科学出版物发布后即可公开访问。这两个基本协议提供了如何向 PRIDE 数据库提交数据的分步指南，并描述了如何访问 PX 门户（称为 ProteomeCentral），该门户可用于搜索任何 PX 成员中可用的数据集。 © 2017 John Wiley & Sons, Inc. 版权所有
The ProteomeXchange (PX) Consortium is the unifying framework for world-leading mass spectrometry (MS)-based proteomics repositories. Current members include the PRIDE database (U.K.), PeptideAtlas/PASSEL, and MassIVE (U.S.A.), and jPOST (Japan). The Consortium standardizes submission and dissemination of public proteomics data worldwide. This is achieved through implementing common data submission guidelines and enforcing metadata requirements by each of the members. Furthermore, the members use a common identifier space. Each dataset receives a unique (PXD) accession number and is publicly accessible as soon as the associated scientific publications are released. The two basic protocols provide a step-by-step guide on how to submit data to the PRIDE database, and describe how to access the PX portal (called ProteomeCentral), which can be used to search datasets available in any of the PX members. © 2017 by John Wiley & Sons, Inc.