Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils
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DOI：
10.1021/acs.jproteome.2c00632
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发表时间：
2023-01-23
影响因子：
4.4
通讯作者：
Dorrestein, Pieter C.
中科院分区：
文献类型：
--
作者：
Bittremieux, Wout;Levitsky, Lev;Dorrestein, Pieter C.
SPECTRUM_UTILS是一个Python包，用于质谱学数据处理和可视化。自问世以来，SPECTRUM_UTILS已经成长为一种基本的软件解决方案，支持蛋白质组学和代谢组学中的各种应用程序，从光谱识别和机器学习应用程序到在线数据仓库的光谱绘制，以及为数十个其他项目的数据分析任务提供帮助。在这里，我们介绍SPECTRUM_UTILS的更新，其中包括集成质谱学社区数据标准的新功能、增强的质谱学数据处理，以及在Python中统一的质谱学数据可视化。
spectrum_utils is a Python package for mass spectrometry data processing and visualization. Since its introduction, spectrum_utils has grown into a fundamental software solution that powers various applications in proteomics and metabolomics, ranging from spectrum preprocessing prior to spectrum identification and machine learning applications to spectrum plotting from online data repositories and assisting data analysis tasks for dozens of other projects. Here, we present updates to spectrum_utils, which include new functionality to integrate mass spectrometry community data standards, enhanced mass spectral data processing, and unified mass spectral data visualization in Python.