SPINS: Standardized Protein NMR Storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra
SPINS: Standardized Protein NMR Storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra
复制标题
DOI：
10.1023/a:1020940806745
复制
发表时间：
2002-10-01
影响因子：
2.7
通讯作者：
Montelione, GT
中科院分区：
文献类型：
--
作者：
Baran, MC;Moseley, HNB;Montelione, GT
现代蛋白质核磁共振光谱实验室对原始实验核磁共振数据集的易于查询的本地档案系统的需求迅速增长。SPINS（标准化蛋白质核磁共振存储）是一个面向对象的关系数据库，通过自动准备将数据提交给BioMagResBank （BMRB）所需的头文件，为大容量核磁共振数据存档、分析组织和结果传播提供了便利。当前版本的SPINS通过在本地实验室文件系统中标准化和集成这些数据的存储和检索，协调了从数据收集到原始NMR数据的BMRB沉积的过程。其他工具包括数据挖掘查询工具、图形数据库管理工具和NMRStar v2.1.1文件生成器。SPINS还包括一个用户友好的基于互联网的图形用户界面，可选择与瓦里安VNMR NMR数据采集软件集成。本文概述了基于SPINS数据库系统的数据模型，描述了它在Oracle中的实现，并概述了SPINS项目的未来计划。
Modern protein NMR spectroscopy laboratories have a rapidly growing need for an easily queried local archival system of raw experimental NMR datasets. SPINS (Standardized ProteIn Nmr Storage) is an object-oriented relational database that provides facilities for high-volume NMR data archival, organization of analyses, and dissemination of results to the public domain by automatic preparation of the header files required for submission of data to the BioMagResBank (BMRB). The current version of SPINS coordinates the process from data collection to BMRB deposition of raw NMR data by standardizing and integrating the storage and retrieval of these data in a local laboratory file system. Additional facilities include a data mining query tool, graphical database administration tools, and a NMRStar v2.1.1 file generator. SPINS also includes a user-friendly internet-based graphical user interface, which is optionally integrated with Varian VNMR NMR data collection software. This paper provides an overview of the data model underlying the SPINS database system, a description of its implementation in Oracle, and an outline of future plans for the SPINS project.