Computing graphlet signatures of network nodes and motifs in Cytoscape with GraphletCounter
Computing graphlet signatures of network nodes and motifs in Cytoscape with GraphletCounter
复制标题
DOI：
10.1093/bioinformatics/btr637
复制
发表时间：
2012-01-15
期刊：
影响因子：
5.8
通讯作者：
Soenmez, Kemal
中科院分区：
文献类型：
--
作者：
Whelan, Christopher;Soenmez, Kemal
Biological network analysis can be enhanced by examining the connections between nodes and the rest of the network. For this purpose we have developed GraphletCounter, an open-source software tool for computing graphlet degree signatures that can operate on its own or as a plug- in to the network analysis environment Cytoscape. A unique characteristic of GraphletCounter is its ability to compute the graphlet signatures of network motifs, which can be specified by files generated by the motif-finding tool mfinder. GraphletCounter displays graphlet signatures for visual inspection within Cytoscape, and can output graphlet data for integration with larger workflows.
