A uniform gene and chromosome nomenclature system for oat (Avena spp.)
A uniform gene and chromosome nomenclature system for oat (Avena spp.)
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DOI：
10.1071/cp23247
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发表时间：
2024-01-01
影响因子：
1.9
通讯作者：
Sen，Taner Z.
中科院分区：
文献类型：
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作者：
Jellen，Eric N.;Wight，Charlene P.;Sen，Taner Z.
背景 燕麦（Avena sativa L. 和近缘种）的几个高质量参考基因组已经发表，预计在不久的将来会出现许多额外的全基因组组装。 目的 这需要国际燕麦命名委员会（IONC；本文的所有合著者）努力设计一个通用系统来命名燕麦基因组和亚基因组、染色体、基因、基因模型 方法 我们评估了现有的命名实践、燕麦全基因组测序的最新数据以及新发布的小麦命名惯例。 主要结果 这些规则的框架已发布在 GrainGenes 数据库网站 (https://wheat.pw.usda.gov/GG3/oatnomenclature) 上。基因命名约定要求对每个基因型采用数字标识符；我们建议通过联系 GrainGenes 策展人、燕麦新闻通讯策展人或 IONC 成员（如上面 GrainGenes 链接中所列）来分配这些标识符。 结论 我们鼓励燕麦研究人员参考这些资源、政策、程序和公约，将其采用为国际命名标准。 含义 采用这些标准将促进燕麦的交流和传播 研究并允许跨平台的程序访问和数据共享，并将为全球燕麦育种和研究做出贡献。
Context Several high-quality reference genomes for oat (Avena sativa L. and relatives) have been published, with the prospect of many additional whole-genome assemblies emerging in the near future.Aims This has necessitated an effort by the International Oat Nomenclature Committee (IONC; all co-authors on this paper) to devise a universal system for naming oat genomes and subgenomes, chromosomes, genes, gene models and quantitative trait loci.Methods We evaluated existing naming practices, recent data from oat whole-genome sequencing, and the newly published convention for wheat nomenclature.Key results A framework for these rules has been posted on the GrainGenes database website (https://wheat.pw.usda.gov/GG3/oatnomenclature). The gene naming convention requires adoption of a numerical identifier for each genotype; we propose that these identifiers be assigned by contacting the GrainGenes curators, the curator of the Oat Newsletter, or a member of the IONC (as listed at the GrainGenes link above).Conclusions We encourage oat researchers to refer to these resources, policies, procedures and conventions, adopting them as an international nomenclature standard.Implications Adoption of these standards will facilitate communication and dissemination of oat research and allow programmatic access and data sharing across platforms, and will contribute to oat breeding and research worldwide.