The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity.

The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity.
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DOI:
10.1093/nar/gkab342
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发表时间:
2021-06-04
影响因子:
14.9
通讯作者:
Heng X
Heng X
中科院分区:
生物学2区
文献类型:
--
作者:
Song Z;Gremminger T;Singh G;Cheng Y;Li J;Qiu L;Ji J;Lange MJ;Zuo X;Chen SJ;Zou X;Boris-Lawrie K;Heng X

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HIV-1逆转录起始于病毒基因组RNA(gRNA)中的引物结合位点(PBS)。尽管PBS-区段的结构在tRNALys 3退火时经历实质性重排,但PBS-区段在gRNA包装期间的适当折叠是重要的,因为它确保了有益宿主因子的加载。DHX 9/RNA解旋酶A(RHA)被募集到gRNA以增强逆转录酶的持续合成能力。由于相互作用的分子细节尚未被定义,我们解决了优先由RHA结合的PBS-片段的溶液结构。结果表明,PBS片段采用了一种由引物激活茎(PAS)、tRNA样元件(TLE)和tRNA退火臂组成的富含腺苷的三向连接结构,破坏PBS片段的三向连接结构可减少逆转录产物,降低病毒的感染性。由于tRNA退火臂的存在,TLE和PAS形成弯曲的螺旋结构,其经历由RHA双链RNA结合结构域1(dsRBD 1)的形状依赖性识别。突变和系统发育分析提供的证据,PBS节段的三向连接结构,优先结合RHA支持有效的逆转录,HIV-1复制的标志性步骤的保护。
HIV-1 reverse transcription initiates at the primer binding site (PBS) in the viral genomic RNA (gRNA). Although the structure of the PBS-segment undergoes substantial rearrangement upon tRNALys3 annealing, the proper folding of the PBS-segment during gRNA packaging is important as it ensures loading of beneficial host factors. DHX9/RNA helicase A (RHA) is recruited to gRNA to enhance the processivity of reverse transcriptase. Because the molecular details of the interactions have yet to be defined, we solved the solution structure of the PBS-segment preferentially bound by RHA. Evidence is provided that PBS-segment adopts a previously undefined adenosine-rich three-way junction structure encompassing the primer activation stem (PAS), tRNA-like element (TLE) and tRNA annealing arm. Disruption of the PBS-segment three-way junction structure diminished reverse transcription products and led to reduced viral infectivity. Because of the existence of the tRNA annealing arm, the TLE and PAS form a bent helical structure that undergoes shape-dependent recognition by RHA double-stranded RNA binding domain 1 (dsRBD1). Mutagenesis and phylogenetic analyses provide evidence for conservation of the PBS-segment three-way junction structure that is preferentially bound by RHA in support of efficient reverse transcription, the hallmark step of HIV-1 replication.
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