OpenMS: a flexible open-source software platform for mass spectrometry data analysis
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
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DOI：
10.1038/nmeth.3959
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发表时间：
2016-09-01
期刊：
影响因子：
48
通讯作者：
Kohlbacher, Oliver
中科院分区：
文献类型：
--
作者：
Roest, Hannes L.;Sachsenberg, Timo;Kohlbacher, Oliver
高分辨率质谱（MS）已成为生命科学中的重要工具，有助于诊断和了解人类疾病，阐明生物分子结构信息和表征细胞信号网络。然而，MS数据量和复杂性的快速增长使得透明，准确和可重复的分析变得困难。我们介绍OpenMS 2.0（www.openms.de），一个强大的，开源的，跨平台的软件，专门设计用于灵活和可重复的高通量MS数据分析。可扩展的OpenMS软件通过C++和Python中定义良好的应用程序编程接口以及标准化的开放数据格式实现常见的质谱数据处理任务。OpenMS还为常见的质谱数据处理任务提供了一套185种工具和现成的工作流程，使用户能够轻松执行复杂的定量质谱分析。
High-resolution mass spectrometry (MS) has become an important tool in the life sciences, contributing to the diagnosis and understanding of human diseases, elucidating biomolecular structural information and characterizing cellular signaling networks. However, the rapid growth in the volume and complexity of MS data makes transparent, accurate and reproducible analysis difficult. We present OpenMS 2.0 (http://www.openms.de), a robust, open-source, cross platform software specifically designed for the flexible and reproducible analysis of high-throughput MS data. The extensible OpenMS software implements common mass spectrometric data processing tasks through a well-defined application programming interface in C++ and Python and through standardized open data formats. OpenMS additionally provides a set of 185 tools and ready-made workflows for common mass spectrometric data processing tasks, which enable users to perform complex quantitative mass spectrometric analyses with ease.