FootPrinter: a program designed for phylogenetic footprinting
FootPrinter: a program designed for phylogenetic footprinting
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DOI：
10.1093/nar/gkg606
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发表时间：
2003-07-01
影响因子：
14.9
通讯作者：
Tompa, M
中科院分区：
文献类型：
--
作者：
Blanchette, M;Tompa, M
系统发育足迹法是一种在一组同源调控区中发现调控元件的方法，通常收集自多个物种。它通过识别那些同源区域中最保守的基序来做到这一点。本说明描述了专门为此目的设计的网络软件，利用同源序列之间的系统发育关系进行更准确的预测。该软件被称为足迹打印机，可在http://bio.cs.washington.edu/software.html上获得。
Phylogenetic footprinting is a method for the discovery of regulatory elements in a set of homologous regulatory regions, usually collected from multiple species. It does so by identifying the best conserved motifs in those homologous regions. This note describes web software that has been designed specifically for this purpose, making use of the phylogenetic relationships among the homologous sequences in order to make more accurate predictions. The software is called FootPrinter and is available at http://bio.cs.washington.edu/software.html.