Prediction of RNA base pairing probabilities on massively parallel computers
Prediction of RNA base pairing probabilities on massively parallel computers
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DOI：
10.1089/10665270050081441
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发表时间：
2000-02-01
影响因子：
1.7
通讯作者：
Stadler, PF
中科院分区：
文献类型：
--
作者：
Fekete, M;Hofacker, IL;Stadler, PF
我们提出了一个实现麦卡斯基尔的算法计算大规模并行消息传递架构的RNA分子的碱基对概率。该程序可用于常规折叠超过10，000个核苷酸的RNA序列。完整的病毒基因组的应用进行了讨论。
We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The program can be used to routinely fold RNA sequences of more than 10,000 nucleotides. Applications to complete viral genomes are discussed.