RuleBender: a visual interface for rule-based modeling.
RuleBender: a visual interface for rule-based modeling.
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RuleBender：基于规则建模的可视化界面。
DOI：
10.1093/bioinformatics/btr197
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发表时间：
2011
期刊：
影响因子：
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通讯作者：
Marai,GElisabeta
中科院分区：
文献类型：
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作者：
Xu,Wen;Smith,AdamM;Faeder,JamesR;Marai,GElisabeta
基于规则的建模（RBM）是一种强大且日益流行的细胞内生物化学建模方法。RBM的当前接口主要是基于文本和命令行驱动的。需要更好的可视化工具使RBM能够被广泛的用户访问，使模型规范更少出错，并改进工作流程。我们提出了RULEBENDER，一个开源的可视化界面，促进了rbm的交互式调试，仿真和分析。可用性：RULEBENDERis免费提供Mac、Windows和Linux版本，网址为http://rulebender.org.Contact:faeder@pitt.edu；marai@cs.pitt.eduSupplementary信息：补充数据可在bioinformaticsonline上获得。
Summary:Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current interfaces for RBM are predominantly text-based and command-line driven. Better visual tools are needed to make RBM accessible to a broad range of users, to make specification of models less error prone and to improve workflows. We present RULEBENDER, an open-source visual interface that facilitates interactive debugging, simulation and analysis of RBMs.Availability:RULEBENDERis freely available for Mac, Windows and Linux at http://rulebender.org.Contact:faeder@pitt.edu; marai@cs.pitt.eduSupplementary information:Supplementary data are available atBioinformaticsonline.