PAnnBuilder: an R package for assembling proteomic annotation data
PAnnBuilder: an R package for assembling proteomic annotation data
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DOI：
10.1093/bioinformatics/btp100
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发表时间：
2009-04-15
期刊：
影响因子：
5.8
通讯作者：
Li, Yixue
中科院分区：
文献类型：
--
作者：
Li, Hong;Ding, Guohui;Li, Yixue
PAnnBuilder是一个R软件包，用于自动组装来自公共资源的蛋白质注释信息，为大规模蛋白质组学研究提供统一的注释数据。解析了16个公共数据库，基于R环境或SQLite数据库构建了54个标注包。这些即用型软件包涵盖了人类、小鼠和大鼠三种模型物种最常用的蛋白质注释。还提供了几个扩展的应用，如基于蛋白质序列相似性的注释。熟练的用户可以使用PAnnBuilder开发自己的软件包。PAnnBuilder可能成为蛋白质组学研究的重要工具。
PAnnBuilder is an R package to automatically assemble protein annotation information from public resources to provide uniform annotation data for large-scale proteomic studies. Sixteen public databases have been parsed and 54 annotation packages have been constructed based on R environment or SQLite database. These ready-to-use packages cover most frequently needed protein annotation for three model species including human, mouse and rat. Several extended applications such as annotation based on protein sequence similarity are also provided. Sophisticated users can develop their own packages using PAnnBuilder. PAnnBuilder may become an important tool for proteomic research.