Research resources: curating the new eagle-i discovery system.
Research resources: curating the new eagle-i discovery system.
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DOI：
10.1093/database/bar067
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发表时间：
2012
期刊：
影响因子：
--
通讯作者：
Haendel M
中科院分区：
文献类型：
--
作者：
Vasilevsky N;Johnson T;Corday K;Torniai C;Brush M;Segerdell E;Wilson M;Shaffer C;Robinson D;Haendel M
为新的数据类型或项目开发生物固化过程和指南是一项具有挑战性的任务。每个项目都找到了定义注释标准的方法，并通过不同程度的计划和不同的工具来确保数据的一致性，以支持和/或报告一致性。此外，即使在单个项目的上下文中，该过程也可以是特定于数据类型的。这篇文章描述了我们在eagle-i项目中的经验，这是一个为期2年的试点项目，旨在开发一个联合的数据存储库网络，在这个网络中，未出版、未共享或其他“不可见”的科学资源可以被编目并提供给科学界。在eagle-i的开发过程中，我们遇到的主要挑战是在同时构建系统和数据模型的同时收集和管理数据的困难，以及获得源数据的实验室的数据管理策略的不足和多样性。我们讨论了我们的方法，以biocuration和改善信息管理策略的研究过程中的重要性，特别是在盘点和使用的研究资源。最后，我们强调了eagle-i和类似努力之间的共性和差异，希望我们的经验教训将有助于其他biocuration努力。数据库URL：www.eagle-i.net
Development of biocuration processes and guidelines for new data types or projects is a challenging task. Each project finds its way toward defining annotation standards and ensuring data consistency with varying degrees of planning and different tools to support and/or report on consistency. Further, this process may be data type specific even within the context of a single project. This article describes our experiences with eagle-i, a 2-year pilot project to develop a federated network of data repositories in which unpublished, unshared or otherwise ‘invisible’ scientific resources could be inventoried and made accessible to the scientific community. During the course of eagle-i development, the main challenges we experienced related to the difficulty of collecting and curating data while the system and the data model were simultaneously built, and a deficiency and diversity of data management strategies in the laboratories from which the source data was obtained. We discuss our approach to biocuration and the importance of improving information management strategies to the research process, specifically with regard to the inventorying and usage of research resources. Finally, we highlight the commonalities and differences between eagle-i and similar efforts with the hope that our lessons learned will assist other biocuration endeavors. Database URL: www.eagle-i.net
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影响因子：
14.9
作者：
Bruford, Elspeth A.;Lush, Michael J.;Wright, Mathew W.;Sneddon, Tam P.;Povey, Sue;Birney, Ewan
通讯作者：
Birney, Ewan
DOI：
10.1093/database/bap001
发表时间：
2009-01-01
影响因子：
5.8
作者：
Costanzo, Maria C.;Skrzypek, Marek S.;Cherry, J. Michael
通讯作者：
Cherry, J. Michael
影响因子：
3
作者：
Gupta, Amarnath;Bug, William;Marenco, Luis;Qian, Xufei;Condit, Christopher;Rangarajan, Arun;Mueller, Hans Michael;Miller, Perry L.;Sanders, Brian;Grethe, Jeffrey S.;Astakhov, Vadim;Shepherd, Gordon;Sternberg, Paul W.;Martone, Maryann E.
通讯作者：
Martone, Maryann E.
影响因子：
46.9
作者：
Taylor, Chris F.;Field, Dawn;Sansone, Susanna-Assunta;Aerts, Jan;Apweiler, Rolf;Ashburner, Michael;Ball, Catherine A.;Binz, Pierre-Alain;Bogue, Molly;Booth, Tim;Brazma, Alvis;Brinkman, Ryan R.;Clark, Adam Michael;Deutsch, Eric W.;Fiehn, Oliver;Fostel, Jennifer;Ghazal, Peter;Gibson, Frank;Gray, Tanya;Grimes, Graeme;Hancock, John M.;Hardy, Nigel W.;Hermjakob, Henning;Julian, Randall K., Jr.;Kane, Matthew;Kettner, Carsten;Kinsinger, Christopher;Kolker, Eugene;Kuiper, Martin;Le Novere, Nicolas;Leebens-Mack, Jim;Lewis, Suzanna E.;Lord, Phillip;Mallon, Ann-Marie;Marthandan, Nishanth;Masuya, Hiroshi;McNally, Ruth;Mehrle, Alexander;Morrison, Norman;Orchard, Sandra;Quackenbush, John;Reecy, James M.;Robertson, Donald G.;Rocca-Serra, Philippe;Rodriguez, Henry;Rosenfelder, Heiko;Santoyo-Lopez, Javier;Scheuermann, Richard H.;Schober, Daniel;Smith, Barry;Snape, Jason;Stoeckert, Christian J., Jr.;Tipton, Keith;Sterk, Peter;Untergasser, Andreas;Vandesompele, Jo;Wiemann, Stefan
通讯作者：
Wiemann, Stefan
影响因子：
64.8
作者：
Howe, Doug;Costanzo, Maria;Fey, Petra;Gojobori, Takashi;Hannick, Linda;Hide, Winston;Hill, David P.;Kania, Renate;Schaeffer, Mary;St Pierre, Susan;Twigger, Simon;White, Owen;Rhee, Seung Yon
通讯作者：
Rhee, Seung Yon