Computing environments for reproducibility: Capturing the "Whole Tale"
Computing environments for reproducibility: Capturing the "Whole Tale"
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DOI：
10.1016/j.future.2017.12.029
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发表时间：
2019-05-01
影响因子：
7.5
通讯作者：
Turner, Kandace
中科院分区：
文献类型：
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作者：
Brinckman, Adam;Chard, Kyle;Turner, Kandace
共享科学知识的行为正在迅速从传统文章和演示文稿转变为可执行的对象，这些对象整合了发现结果所依赖的数据和计算细节（例如脚本和工作流）。这构成了数据和过程的耦合，对于推进科学至关重要，但面临技术和机构障碍。整个故事项目旨在通过将计算，数据密集型研究工作与更大的研究过程联系起来，将知识发现和传播过程转变为数据产品与研究文章结合以创建“生活出版物”或故事的研究过程，以解决这些障碍。整个故事都集中在整个科学方面，使用户在长期的科学尾声中增强了用户的能力，以及对获得大数据和计算资源的需求的权力用户。我们在此处报告整个故事环境的设计，架构和实施。 （c）2018年作者。由Elsevier B.V.出版
The act of sharing scientific knowledge is rapidly evolving away from traditional articles and presentations to the delivery of executable objects that integrate the data and computational details (e.g., scripts and workflows) upon which the findings rely. This envisioned coupling of data and process is essential to advancing science but faces technical and institutional barriers. The Whole Tale project aims to address these barriers by connecting computational, data-intensive research efforts with the larger research process transforming the knowledge discovery and dissemination process into one where data products are united with research articles to create "living publications" or tales. The Whole Tale focuses on the full spectrum of science, empowering users in the long tail of science, and power users with demands for access to big data and compute resources. We report here on the design, architecture, and implementation of the Whole Tale environment. (C) 2018 The Authors. Published by Elsevier B.V.