Manual of recommended practices for modelling physical – biological interactions during fish early life
Manual of recommended practices for modelling physical – biological interactions during fish early life
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鱼类早期物理-生物相互作用建模推荐实践手册
DOI：
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发表时间：
2009
期刊：
影响因子：
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通讯作者：
Uffe H⊘gsbro Thygesen
中科院分区：
文献类型：
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作者：
E. North;A. Gallego;P. Petitgas;Bjørn Ådlandsvik;Joachim Bartsch;David Brickman;H. Browman;Karen Edwards;Albert J Hermann;M. Huret;J. Leis;P. Mccloghrie;B. Megrey;Thomas Miller;C. Parada;Claire B. Paris;Pierre Pepin;Uffe H⊘gsbro Thygesen
本推荐实践手册 (MRP) 的目的是总结鱼类早期生命期间物理-生物相互作用建模的适当方法，推荐特定应用背景下的建模技术，并找出知识差距。本手册旨在为有兴趣将数值模型应用于鱼类早期生命的早期职业建模者提供参考，他们将从生物-物理耦合模型的推荐实践总结中受益，这些模型结合了三维循环模型的预测，以确定鱼卵、幼体和幼鱼从产卵到育苗区的过渡。对于当前鱼类早期生命数值模拟的从业者来说，该手册提供了最新技术和需要进一步研究的领域的更新。尽管该手册重点关注有鳍鱼类，但许多总结的建模技术和推荐实践适用于浮游生物建模，包括浮游动物和其他浮游生物（例如软体动物和甲壳类动物）。重要的是要认识到“最佳”建模实践取决于建模练习的目标。换句话说，没有一个模型适合所有应用程序。相反，模型的制定是针对具体情况的。由于方法取决于努力的目标，因此本手册概述了鱼类早期生命模型的基本组成部分，并在三个特定应用的背景下提出了建议：自适应采样、连通性和补充预测。前三节（第 1 节 - 水动力模型、第 2 节 - 粒子跟踪和第 3 节 - 生物过程）总结了作为鱼类早期生命三维模型重要组成部分的方法......
The objectives of this manual of recommended practices (MRP) are to summarize appropriate methods for modelling physical – biological interactions during the early life of fish, to recommend modelling techniques in the context of specific applications, and to identify gaps in knowledge. This manual is intended to provide a reference for early‐career modellers who are interested in applying numerical models to fish early life and who would benefit from a summary of recommended practices for coupled biological – physical models that incorporate predictions from threedimensional circulation models to determine the transit of fish eggs, larvae, and juveniles from spawning to nursery areas. For current practitioners of numerical modelling in fish early life, the manual provides updates on latest techniques and areas in need of further research. Although the manual focuses on finfish, many of the summarized modelling techniques and recommended practices apply to modelling planktonic organisms, including zooplankton and other meroplankton (e.g. molluscs and crustaceans). It is important to recognize that “best” modelling practices depend upon the objective of the modelling exercise. In other words, no single model is appropriate to all applications. Instead, model formulations are situation‐specific. Because methodologies depend upon the goal of the endeavour, this manual includes an overview of basic components of fish early life models and presents recommendations in the context of three specific applications: adaptive sampling, connectivity, and recruitment prediction. The first three sections (Section 1 – Hydrodynamic models, Section 2 – Particle tracking, and Section 3 – Biological processes) summarize methodologies that are important components of three‐dimensional models of the early life of fish...