COMPILATION OF TRANSFER-RNA SEQUENCES AND SEQUENCES OF TRANSFER-RNA GENES
COMPILATION OF TRANSFER-RNA SEQUENCES AND SEQUENCES OF TRANSFER-RNA GENES
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DOI：
10.1093/nar/21.13.3011
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发表时间：
1993-07-01
影响因子：
14.9
通讯作者：
SPRINZL, M
中科院分区：
文献类型：
--
作者：
STEINBERG, S;MISCH, A;SPRINZL, M
表1给出了编译过程中所有序列的摘要。本摘要中的序列按来源（即生物体或细胞器）列出。每个来源都由一个四位数的代码指定：前三个数字标识生物体，最后一个数字指定同位受体。表中还包括该序列来源于的生物体的（缩写）名称。序列数据库中tRNA或tRNA基因的序列、参考文献和脚注存储在EMBL数据库中。除非后来获得了额外的信息（如碱基修改、更正等），否则这些参考文献仅限于该序列的首次完整发表。在这种情况下，增加了额外的参考资料。为了便于计算机分析，从这个版本开始，序列的表示已经改变。在此之前，我们严格使用原始文献中发表的序列、注释和比对。根据1979年冷泉港tRNA会议通过的规则，仅对修饰碱基的术语和核苷酸的编号进行了更改。从这一版本开始，使用了与tRNA系统发育和三维结构最兼容的新排列。特别是在可变区核苷酸残基的排列和不寻常的线粒体trna的排列被改变。编码硒代半胱氨酸的trna作为单独一组处理。与上一版(1)的情况一样，本出版物不包含序列打印输出。相反，这些序列已存储在EMBL数据库中。因此，应引用本出版物作为从电子访问embl数据库获得的数据的参考。
A summary of all sequences in the compilation is given in Table 1. The sequences in this summary are listed by source, ie organism or organelle. Each source is specified by a four-digit code: the first three numbers identify the organism and the last number specifies the isoacceptor. Also included in the table is the (abbreviated) name of the organism from which the sequence was derived. The sequences, references and footnotes for tRNAs, or tRNA genes included in the sequence database are deposited in the EMBL Data Library. The references are restricted to the first complete publication of the sequence unless additional information (eg base modification, corrections, etc.) was later obtained. In such cases additional references were added. In order to facilitate a computer analysis, starting with this edition, the presentation of the sequences has been changed. Previously, we used the sequences, annotations and alignments strictly as they were published in the original literature. Only changes concerning the terminology of modified bases and numbering of the nucleotides, according to the rules adopted at the Cold Spring Harbor tRNA Meeting 1979 [2], were performed. Starting with this edition, a new alignment is used, which is most compatible with the tRNA phylogeny and the three-dimensional structure. In particular the alignment of the nucleotide residues in the variable region and the alignment of unusual mitochondrial tRNAs were altered. The tRNAs coding for selenocysteine were treated as a separate group. As was the case in the previous edition (1), this publication does not contain a sequence printout. Instead, the sequences have been deposited with the EMBL Data Library. This publication should be therefore quoted as a reference for data obtained from the electronically accessibleEMBL-database.