Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
复制标题
DOI：
10.1111/j.1755-0998.2010.02847.x
复制
发表时间：
2010-05-01
影响因子：
7.7
通讯作者：
Lischer, Heidi E. L.
中科院分区：
文献类型：
--
作者：
Excoffier, Laurent;Lischer, Heidi E. L.
我们在这里提出了一个新版本的Arlequin程序，有三种不同的形式：Windows图形版本（Winarl35），Arlequin的控制台版本（arlecore），和一个特定的控制台版本计算汇总统计（arlsumstat）。命令行版本可以在Linux和Windows下运行。新版本的主要创新包括增强XML格式的输出，将显示计算结果的图形直接嵌入输出文件的可能性，以及实施一种新的方法来检测基因组扫描选择下的基因座。命令行版本旨在处理大量文件，arlsumstat可用于在近似贝叶斯计算框架内从模拟数据集生成汇总统计数据。
We present here a new version of the Arlequin program available under three different forms: a Windows graphical version (Winarl35), a console version of Arlequin (arlecore), and a specific console version to compute summary statistics (arlsumstat). The command-line versions run under both Linux and Windows. The main innovations of the new version include enhanced outputs in XML format, the possibility to embed graphics displaying computation results directly into output files, and the implementation of a new method to detect loci under selection from genome scans. Command-line versions are designed to handle large series of files, and arlsumstat can be used to generate summary statistics from simulated data sets within an Approximate Bayesian Computation framework.