SoS Notebook: an interactive multi-language data analysis environment.
SoS Notebook: an interactive multi-language data analysis environment.
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SoS Notebook：交互式多语言数据分析环境。
DOI：
10.1093/bioinformatics/bty405
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发表时间：
2018
期刊：
影响因子：
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通讯作者：
Weinstein,JohnN
中科院分区：
文献类型：
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作者：
Peng,Bo;Wang,Gao;Ma,Jun;Leong,ManChong;Wakefield,Chris;Melott,James;Chiu,Yulun;Du,Di;Weinstein,JohnN
动机复杂的生物信息学数据分析工作流程涉及多种不同语言的脚本，很难整合、共享和复制。目前还缺乏一种能够简化数据收集、分析、可视化和报告这类多语言分析的整个过程的环境。结果我们开发了Script of Scripts (SoS) Notebook，这是一个基于web的笔记本环境，允许在单个笔记本中使用多种脚本语言，数据在语言内部和跨语言之间自由流动。SoS Notebook使研究人员能够使用最适合工作流程不同部分的工具进行复杂的生物信息学分析，而不受特定语言的限制或跨语言交流的复杂性。可用性和实现sos Notebook托管于http://vatlab.github.io/SoS/，并在BSD许可下发布。
MotivationComplex bioinformatic data analysis workflows involving multiple scripts in different languages can be difficult to consolidate, share and reproduce. An environment that streamlines the entire processes of data collection, analysis, visualization and reporting of such multi-language analyses is currently lacking.ResultsWe developed Script of Scripts (SoS) Notebook, a web-based notebook environment that allows the use of multiple scripting language in a single notebook, with data flowing freely within and across languages. SoS Notebook enables researchers to perform sophisticated bioinformatic analysis using the most suitable tools for different parts of the workflow, without the limitations of a particular language or complications of cross-language communications.Availability and implementationSoS Notebook is hosted at http://vatlab.github.io/SoS/ and is distributed under a BSD license.