MICdb: database of prokaryotic microsatellites
MICdb: database of prokaryotic microsatellites
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DOI：
10.1093/nar/gkg002
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发表时间：
2003-01-01
影响因子：
14.9
通讯作者：
Nagarajaram, HA
中科院分区：
文献类型：
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作者：
Sreenu, VB;Alevoor, V;Nagarajaram, HA
MICdb（微卫星数据库）（http://www.cdfd.org.in/micas）是从全测序的原核生物基因组中提取的非冗余微卫星的综合关系数据库。该数据库的当前版本（1.0）已经从属于不同系统发育群的83个基因组中编译而成。该数据库已连接到MICAS，即基于网络的微卫星分析服务器。MICAS提供了一个用户友好的前端系统地从基因组中提取微卫星束的数据。该数据库包含与微卫星有关的以下信息：包含微卫星区（编码/非编码，如果编码，则其GenBank注释）；它们出现的频率，重复图案的大小和数量；以及束的序列。MICAS还提供了Autoprimer的接口，Autoprimer是一个引物设计程序，可以自动为选定的微卫星位点设计引物。
The MICdb (Microsatellites Database) (http://www.cdfd.org.in/micas) is a comprehensive relational database of non-redundant microsatellites extracted from fully sequenced prokaryotic genomes. The current version (1.0) of the database has been compiled from 83 genomes belonging to different phylogenetic groups. This database has been linked to MICAS, the web-based Microstatellite Analysis Server. MICAS provides a user-friendly front-end to systematically extract data on microsatellite tracts from genomes. The database contains the following information pertaining to the microsatellites: the regions (coding/non-coding, if coding, their GenBank annotations) containing microsatellite tracts; the frequencies of their occurrences, the size and the number of repeating motifs; and the sequences of the tracts. MICAS also provides an interface to Autoprimer, a primer design program to automatically design primers for selected microsatellite loci.