The complete mitochondrial genome of Holothuria spinifera (Theel, 1866)
The complete mitochondrial genome of Holothuria spinifera (Theel, 1866)
复制标题
海参完整的线粒体基因组（Theel，1866）
DOI：
10.1080/23802359.2020.1746704
复制
发表时间：
2020-04-02
影响因子：
0.5
通讯作者：
Ding, Jun
中科院分区：
文献类型：
--
作者：
Ding, Beichen;Sun, Yi;Ding, Jun
在这项研究中，在Illumina平台上，将棘海参的完整线粒体基因组列在序列中，并使用NovoPlasty v. 2.7.1进行收集。该基因已提交至NCBI GenBank，登录号为MN 816440。基因组大小为15，812 bp，包含12个蛋白质编码基因、2个rRNA基因和22个tRNA基因。棘胸海参mtDNA的A + T构型占60.44%。除了5个tRNA和ND 6外，其余的都位于H链上。利用MEGA5.0软件中的Neighbor-Joining方法对13种海参的系统发育关系进行了分析。棘海参与Parastichopus parvimensis关系最密切。
In this research, on an Illumina platform, the full mitochondrial genome of Holothuria spinifera was listed in a sequence and also gathered by using the NovoPlasty v. 2.7.1. It was submitted to NCBI GenBank, and is available with accession number MN816440. The size of genome was 15,812 bp and contained 12 protein-coding genes, two rRNA genes, and 22 tRNA genes. The configuration of A + T in Holothuria spinifera mtDNA was 60.44%. Except five tRNAs and ND6, others are placed on the H-strand. By using the Neighbor-Joining method by software MEGA5.0, the phylogenetic relationship of 13 species of sea cucumber was analyzed. Holothuria spinifera was most closely associated to Parastichopus parvimensis.