Taking the first steps towards a standard for reporting on phylogenies:: Minimum information about a phylogenetic analysis (MIAPA)
Taking the first steps towards a standard for reporting on phylogenies:: Minimum information about a phylogenetic analysis (MIAPA)
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DOI：
10.1089/omi.2006.10.231
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发表时间：
2006-06-01
影响因子：
3.3
通讯作者：
Zmasek, Christian
中科院分区：
文献类型：
--
作者：
Leebens-Mack, Jim;Vision, Todd;Zmasek, Christian
自从系统基因组学作为基因组学和系统发育学的交叉学科被引入以来的八年里，该领域为基因功能、基因组历史和有机体关系提供了基本的见解。随着正在生成全基因组和大型转录组序列集的分类单元的数量和多样性的增加，系统基因组学的实用性也在增长。我们断言，通过开发和完善系统发育分析的最低报告标准，可以增强比较生物学中基因组和系统发育观点之间的协同作用。受到微阵列实验最低限度信息 (MIAME) 标准制定的鼓励，我们提出了类似的系统发育分析最低限度信息 (MIAPA) 标准制定路线图。这一标准成功制定和实施的关键在于系统发育分析软件开发人员、系统发育数据库开发人员、系统发育组学从业者和期刊编辑的广泛参与。本文是 OMICS 数据标准特刊的一部分。
In the eight years since phylogenomics was introduced as the intersection of genomics and phylogenetics, the field has provided fundamental insights into gene function, genome history and organismal relationships. The utility of phylogenomics is growing with the increase in the number and diversity of taxa for which whole genome and large transcriptome sequence sets are being generated. We assert that the synergy between genomic and phylogenetic perspectives in comparative biology would be enhanced by the development and refinement of minimal reporting standards for phylogenetic analyses. Encouraged by the development of the Minimum Information About a Microarray Experiment (MIAME) standard, we propose a similar roadmap for the development of a Minimal Information About a Phylogenetic Analysis (MIAPA) standard. Key in the successful development and implementation of such a standard will be broad participation by developers of phylogenetic analysis software, phylogenetic database developers, practitioners of phylogenomics, and journal editors.This paper is part of the special issue of OMICS on data standards.