Cluster Flow: A user-friendly bioinformatics workflow tool.
Cluster Flow: A user-friendly bioinformatics workflow tool.
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DOI：
10.12688/f1000research.10335.2
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发表时间：
2016
期刊：
影响因子：
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通讯作者：
Andrews S
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文献类型：
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作者：
Ewels P;Krueger F;Käller M;Andrews S
管道工具在生物信息学领域变得越来越重要。使用管道管理器来管理和运行由多个工具组成的工作流可以减少工作量，并使分析结果更具可重复性。现有的工具需要大量的工作来安装和运行，通常需要在运行任何分析之前从头开始编写管道脚本。我们提出了集群流，一个简单而灵活的生物信息学管道工具，旨在快速，易于安装。Cluster Flow附带40个模块，用于常见的NGS处理步骤，开箱即用。流水线是使用这些模块组装的，语法简单，可以根据需要轻松修改。核心助手函数自动化了许多常见的NGS过程，使运行管道变得简单。Cluster Flow在GitHub上以GNU GPLv3许可证提供。文档、示例和在线演示可在http://clusterflow.io上获得。
Pipeline tools are becoming increasingly important within the field of bioinformatics. Using a pipeline manager to manage and run workflows comprised of multiple tools reduces workload and makes analysis results more reproducible. Existing tools require significant work to install and get running, typically needing pipeline scripts to be written from scratch before running any analysis. We present Cluster Flow, a simple and flexible bioinformatics pipeline tool designed to be quick and easy to install. Cluster Flow comes with 40 modules for common NGS processing steps, ready to work out of the box. Pipelines are assembled using these modules with a simple syntax that can be easily modified as required. Core helper functions automate many common NGS procedures, making running pipelines simple. Cluster Flow is available with an GNU GPLv3 license on GitHub. Documentation, examples and an online demo are available at http://clusterflow.io.