geomorph v4.0 and gmShiny: Enhanced analytics and a new graphical interface for a comprehensive morphometric experience
geomorph v4.0 and gmShiny: Enhanced analytics and a new graphical interface for a comprehensive morphometric experience
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DOI：
10.1111/2041-210x.13723
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发表时间：
2021-09-24
影响因子：
6.6
通讯作者：
Adams, Dean C.
中科院分区：
文献类型：
--
作者：
Baken, Erica K.;Collyer, Michael L.;Adams, Dean C.
1. 几何形态计量学（GM）工具对于有意义地量化和理解形状等复杂性状的变异模式至关重要。近年来，由于新的分析方法的发展和计算效率的提高，这一领域可回答问题的广度急剧增加。在本文中，我们描述了geomorph（一个广泛使用的量化和分析转基因数据的R软件包）随着该领域的发展而发展的方式。我们介绍了geomorph v4.0，并描述了这个版本在以前的版本上有显著改进的方式。我们还提供了一个易于实现的新的图形用户界面，gmshony .4。这些贡献使地貌成为转基因分析的主要工具，特别是那些采用系统发育比较方法的工具。
1. Geometric morphometric (GM) tools are essential for meaningfully quantifying and understanding patterns of variation in complex traits like shape. In this field, the breadth of answerable questions has grown dramatically in recent years through the development of new analyses and increased computational efficiency.2. In this note, we describe the ways in which geomorph, a widely used R package for quantifying and analysing GM data, has grown with the field.3. We present geomorph v4.0 and describe the ways in which this version has dramatically improved upon previous versions. We also present a new graphical user interface for easy implementation, gmShiny.4. These contributions position geomorph to be the primary tool for GM analyses, particularly those employing a phylogenetic comparative approach.