SED-ML web tools: generate, modify and export standard-compliant simulation studies.

SED-ML web tools: generate, modify and export standard-compliant simulation studies.
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SED-ML Web 工具:生成、修改和导出符合标准的模拟研究。

DOI:
10.1093/bioinformatics/btw812
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发表时间:
2017
期刊:
Bioinformatics (Oxford, England)
影响因子:
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通讯作者:
Scharm,Martin
Scharm,Martin
中科院分区:
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文献类型:
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作者:
Bergmann,FrankT;Nickerson,David;Waltemath,Dagmar;Scharm,Martin

文献摘要

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仿真实验描述标记语言(SED-ML)是一种独立于软件工具交换仿真研究的标准化格式。我们介绍了SED-ML Web Tools,一个用于创建、编辑、模拟和验证SED-ML文档的在线应用程序。Web Tools实现了所有当前的SED-ML规范,因此支持SBML和CellML格式的模型的复杂修改和联合模拟。最终,Web Tools降低了使用SED-ML文档的门槛,并帮助用户创建有效的模拟描述。可用性和实现http://sysbioapps.dyndns.org/SED-ML_Web_Tools/
SummaryThe Simulation Experiment Description Markup Language (SED-ML) is a standardized format for exchanging simulation studies independently of software tools. We present the SED-ML Web Tools, an online application for creating, editing, simulating and validating SED-ML documents. The Web Tools implement all current SED-ML specifications and, thus, support complex modifications and co-simulation of models in SBML and CellML formats. Ultimately, the Web Tools lower the bar on working with SED-ML documents and help users create valid simulation descriptions.Availability and Implementationhttp://sysbioapps.dyndns.org/SED-ML_Web_Tools/.