Snap: an integrated SNP annotation platform.

Snap: an integrated SNP annotation platform.
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Snap:集成的 SNP 注释平台

DOI:
10.1093/nar/gkl969
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发表时间:
2007-01
影响因子:
14.9
通讯作者:
Wang, Jun
Wang, Jun
中科院分区:
生物学2区
文献类型:
--
作者:
Li, Shengting;Ma, Lijia;Li, Heng;Vang, Soren;Hu, Yafeng;Bolund, Lars;Wang, Jun

文献摘要

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Snap(单核苷酸多态性注释平台)是一个旨在基于人类基因组中的单核苷酸多态性(SNP)全面分析单个基因以及基因之间关系的服务器。该平台的目的是促进医学研究框架内SNP的发现和分析研究。通过一个用户友好的网络界面,可以通过基因名称、描述、位置、SNP编号或克隆名称进行搜索。它整合了多个公共数据库,包括来自Ensembl的基因信息,来自Uniprot/SWISS - PROT、Pfam和DAS - CBS的蛋白质特征信息。基因关系信息来自BIND、MINT、KEGG,并与来自TreeFam的直系同源数据整合,以扩展当前的相互作用网络。还开发了用于引物设计和错剪接分析的集成工具,以便于对关注其变异的单个基因进行实验分析。Snap可通过以下网址获取:[具体网址缺失]和[具体网址缺失]
Snap (Single Nucleotide Polymorphism Annotation Platform) is a server designed to comprehensively analyze single genes and relationships between genes basing on SNPs in the human genome. The aim of the platform is to facilitate the study of SNP finding and analysis within the framework of medical research. Using a user-friendly web interface, genes can be searched by name, description, position, SNP ID or clone name. Several public databases are integrated, including gene information from Ensembl, protein features from Uniprot/SWISS-PROT, Pfam and DAS-CBS. Gene relationships are fetched from BIND, MINT, KEGG and are integrated with ortholog data from TreeFam to extend the current interaction networks. Integrated tools for primer-design and mis-splicing analysis have been developed to facilitate experimental analysis of individual genes with focus on their variation. Snap is available at and at .