JDotter: a Java interface to multiple dotplots generated by dotter
JDotter: a Java interface to multiple dotplots generated by dotter
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DOI：
10.1093/bioinformatics/btg406
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发表时间：
2004-01-22
期刊：
影响因子：
5.8
通讯作者：
Upton, C
中科院分区：
文献类型：
--
作者：
Brodie, R;Roper, RL;Upton, C
总结：Java-Dotter（JDotter）是一个独立于平台的Java交互式界面，用于Linux版本的Dotter，一个广泛使用的程序，用于生成大的DNA或蛋白质序列的点图。JDotter作为客户端-服务器应用程序运行，可以将新序列发送到Dotter程序进行比对，并快速访问预处理点图的存储库。JDotter还与序列数据库或文件系统连接，以显示补充特征数据。因此，JDotter极大地简化了在处理大量基因组并具有多平台组织的实验室中对点图数据的访问。
Summary: Java-Dotter (JDotter) is a platform-independent Java interactive interface for the Linux version of Dotter, a widely used program for generating dotplots of large DNA or protein sequences. JDotter runs as a client-server application and can send new sequences to the Dotter program for alignment as well as rapidly access a repository of preprocessed dotplots. JDotter also interfaces with a sequence database or file system to display supplementary feature data. Thus, JDotter greatly simplifies access to dotplot data in laboratories that deal with large numbers of genomes and have a multi-platform organization..