OntoQuery: easy-to-use web-based OWL querying.
OntoQuery: easy-to-use web-based OWL querying.
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OntoQuery:易于使用的基于 Web 的 OWL 查询。
DOI:
10.1093/bioinformatics/btt514
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发表时间:
2013
期刊:
影响因子:
--
通讯作者:
Tudose I
中科院分区:
文献类型:
--
作者:
Tudose I
Summary:The Web Ontology Language (OWL) provides a sophisticated language for building complex domain ontologies and is widely used in bio-ontologies such as the Gene Ontology. The Protégé-OWL ontology editing tool provides a query facility that allows composition and execution of queries with the human-readable Manchester OWL syntax, with syntax checking and entity label lookup. No equivalent query facility such as the Protégé Description Logics (DL) query yet exists in web form. However, many users interact with bio-ontologies such as chemical entities of biological interest and the Gene Ontology using their online Web sites, within which DL-based querying functionality is not available. To address this gap, we introduce the OntoQuery web-based query utility.Availability and implementation:The source code for this implementation together with instructions for installation is available at http://github.com/IlincaTudose/OntoQuery. OntoQuery software is fully compatible with all OWL-based ontologies and is available for download (CC-0 license). The ChEBI installation, ChEBI OntoQuery, is available at http://www.ebi.ac.uk/chebi/tools/ontoquery.Contact: hastings@ebi.ac.uk