Dating the age of admixture via wavelet transform analysis of genome-wide data.

Dating the age of admixture via wavelet transform analysis of genome-wide data.
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DOI:
10.1186/gb-2011-12-2-r19
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发表时间:
2011
期刊:
影响因子:
12.3
通讯作者:
Stoneking M
Stoneking M
中科院分区:
生物学1区
文献类型:
--
作者:
Pugach I;Matveyev R;Wollstein A;Kayser M;Stoneking M

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我们描述了一种基于主成分分析(PCA)的基因组扫描方法来分析全基因组的混合结构,并引入小波变换分析作为一种估计混合时间的方法。我们通过模拟对小波变换方法进行测试,并将其应用于来自八个人类混合群体的全基因组单核苷酸多态性(SNP)数据。小波变换方法在确定混合时间方面比现有方法具有更好的分辨率,并且可应用于来自人类或其他物种的SNP或序列数据。
We describe a PCA-based genome scan approach to analyze genome-wide admixture structure, and introduce wavelet transform analysis as a method for estimating the time of admixture. We test the wavelet transform method with simulations and apply it to genome-wide SNP data from eight admixed human populations. The wavelet transform method offers better resolution than existing methods for dating admixture, and can be applied to either SNP or sequence data from humans or other species.
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