GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring
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DOI：
10.1093/bioinformatics/btl605
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发表时间：
2007-02-01
期刊：
影响因子：
5.8
通讯作者：
Aittokallio, Tero
中科院分区：
文献类型：
--
作者：
Garcia, Olivier;Saveanu, Cosmin;Aittokallio, Tero
我们已经实现了一个图形布局算法，暴露基因本体（GO）类结构的网络节点。它可以与Cytoscape的BiNGO插件结合使用，该插件可以找到在给定网络中过度代表的GO类别。我们的插件名为GOlorize，它首先使用特定于类别的颜色编码突出显示类成员，然后使用类定向布局算法构建增强的网络可视化可用性：http://www.cytoscape.org/plugins2.phpContact:teanai@pasteur.frSupplementary信息：安装说明和教程http://www.cytoscape.org/plugins/GOlorize/GOlorizeUserGuide.pdf。
We have implemented a graph layout algorithm that exposes Gene Ontology (GO) class structure on the network nodes. It can be used in conjunction with BiNGO plug-in to Cytoscape, which finds the GO categories over-represented in a given network. Our plug-in, named GOlorize, first highlights the class members with category-specific color-coding and then constructs an enhanced visualization of the network using a class-directed layout algorithmAvailability:http://www.cytoscape.org/plugins2.phpContact:teanai@pasteur.frSupplementary information: Installation instructions and tutorial at http://www.cytoscape.org/plugins/GOlorize/GOlorizeUserGuide.pdf.