phytools: an R package for phylogenetic comparative biology (and other things)
phytools: an R package for phylogenetic comparative biology (and other things)
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DOI：
10.1111/j.2041-210x.2011.00169.x
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发表时间：
2012-04-01
影响因子：
6.6
通讯作者：
Revell, Liam J.
中科院分区：
文献类型：
--
作者：
Revell, Liam J.
1.在这里，我为R统计计算环境提供了一个新的、多功能的系统发育学软件包--PhyTools。2.该资料包的重点是系统发育比较生物学的方法；但它也包括用于树推断、系统发育输入/输出、标绘、操纵和其他几项任务的工具。3.我对PhyTools中实现的主要方法进行了描述和制表，并以两个说明性示例的形式提供了一些用法演示。4.最后，我简要地描述了一个活跃的网络日志，我用它来记录PhyTool目前和未来的发展。我还注意到了R计算环境中关于系统发育的其他网络资源。
1. Here, I present a new, multifunctional phylogenetics package, phytools, for the R statistical computing environment. 2. The focus of the package is on methods for phylogenetic comparative biology; however, it also includes tools for tree inference, phylogeny input / output, plotting, manipulation and several other tasks. 3. I describe and tabulate the major methods implemented in phytools, and in addition provide some demonstration of its use in the form of two illustrative examples. 4. Finally, I conclude by briefly describing an active web-log that I use to document present and future developments for phytools. I also note other web resources for phylogenetics in the R computational environment.