Immunophenotype-associated gene signature in ductal breast tumors varies by receptor subtype, but the expression of individual signature genes remains consistent.
Immunophenotype-associated gene signature in ductal breast tumors varies by receptor subtype, but the expression of individual signature genes remains consistent.
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DOI：
10.1002/cam4.4095
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发表时间：
2021-08
期刊：
影响因子：
4
通讯作者：
Vazquez AI
中科院分区：
文献类型：
--
作者：
Behring M;Ye Y;Elkholy A;Bajpai P;Agarwal S;Kim HG;Ojesina AI;Wiener HW;Manne U;Shrestha S;Vazquez AI
In silico deconvolution of invasive immune cell infiltration in bulk breast tumors helps characterize immunophenotype, expands treatment options, and influences survival endpoints. In this study, we identify the differential expression (DE) of the LM22 signature to classify immune‐rich and ‐poor breast tumors and evaluate immune infiltration by receptor subtype and lymph node metastasis. Using publicly available data, we applied the CIBERSORT algorithm to estimate immune cells infiltrating the tumor into immune‐rich and immune‐poor groups. We then tested the association of receptor subtype and nodal status with immune‐rich/poor phenotype. We used DE to test individual signature genes and over‐representation analysis for related pathways. CCL19 and CXCL9 expression differed between rich/poor signature groups regardless of subtype. Overexpression of CHI3L2 and FES was observed in triple negative breast cancers (TNBCs) relative to other subtypes in immune‐rich tumors. Non‐signature genes, LYZ, C1QB, CORO1A, EVI2B, GBP1, PSMB9, and CD52 were consistently overexpressed in immune‐rich tumors, and SCUBE2 and GRIA2 were associated with immune‐poor tumors. Immune‐rich tumors had significant upregulation of genes/pathways while none were identified in immune‐poor tumors. Overall, the proportion of immune‐rich/poor tumors differed by subtype; however, a subset of 10 LM22 genes that marked immune‐rich status remained the same across subtype. Non‐LM22 genes differentially expressed between the phenotypes suggest that the biologic processes responsible for immune‐poor phenotype are not yet well characterized. Our approach classified 2369 patients into two groups (immune‐rich, and immune‐poor) using an immune cell expression signature. The overall frequency of immune‐rich versus immune‐poor tumors differed by receptor subtype, however the specific signature genes remained the same, suggesting that signature expression is a stronger determinant of immune infiltration than receptor subtype.
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影响因子：
12.3
作者：
Nagalla S;Chou JW;Willingham MC;Ruiz J;Vaughn JP;Dubey P;Lash TL;Hamilton-Dutoit SJ;Bergh J;Sotiriou C;Black MA;Miller LD
通讯作者：
Miller LD
影响因子：
64.8
作者：
Curtis, Christina;Shah, Sohrab P.;Chin, Suet-Feung;Turashvili, Gulisa;Rueda, Oscar M.;Dunning, Mark J.;Speed, Doug;Lynch, Andy G.;Samarajiwa, Shamith;Yuan, Yinyin;Graef, Stefan;Ha, Gavin;Haffari, Gholamreza;Bashashati, Ali;Russell, Roslin;McKinney, Steven;Langerod, Anita;Green, Andrew;Provenzano, Elena;Wishart, Gordon;Pinder, Sarah;Watson, Peter;Markowetz, Florian;Murphy, Leigh;Ellis, Ian;Purushotham, Arnie;Borresen-Dale, Anne-Lise;Brenton, James D.;Tavare, Simon;Caldas, Carlos;Aparicio, Samuel
通讯作者：
Aparicio, Samuel
乳腺癌中免疫浸润及其临床意义的模式：一项基于基因表达的回顾性研究。
影响因子：
15.8
作者：
Ali HR;Chlon L;Pharoah PD;Markowetz F;Caldas C
通讯作者：
Caldas C
DOI：
10.1111/j.2517-6161.1995.tb02031.x
发表时间：
1995-01-01
影响因子：
5.8
作者：
BENJAMINI, Y;HOCHBERG, Y
通讯作者：
HOCHBERG, Y
影响因子：
50.3
作者：
Chin, Koei;DeVries, Sandy;Gray, Joe W.
通讯作者：
Gray, Joe W.