Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.

Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.
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DOI:
10.1038/ng.803
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发表时间:
2011-05
期刊:
影响因子:
30.8
通讯作者:
--
中科院分区:
生物学1区
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--
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我们试图通过阶段性关联研究(GERAD+)和阿尔茨海默病遗传联盟(ADGC)报告的提示性基因座检测来确定阿尔茨海默病(AD)的新易感基因座。首先,我们对四个全基因组关联数据集进行了综合分析(第一阶段),并确定了10个P≤1×10−5的新变体。在一个独立的样本中检测这些数据的相关性(第2阶段)。在两个基因座的三个SNP复制,并在进一步的样品中显示出关联的证据(阶段3)。所有数据的荟萃分析提供了令人信服的证据,表明ABCA 7(meta-P 4.5×10−17;包括ADGC meta-P =5.0×10−21)和MS 4A基因簇(rs610932,meta-P =1.8×10−14;包括ADGC meta-P =1.2×10−16; rs670139,meta-P =1.4×10−9;包括ADGC meta-P =1.1×10−10)是AD的新易感基因座。其次,我们观察到ADGC GWAS报告的三个提示性位点相关的独立证据,当它们组合在一起时显示出全基因组意义:(GERAD+ P=8.0×10−4;包括ADGC meta-P =8.6×10−9),CD 33(GERAD+ P=2.2×10−4;包括ADGC meta-P =1.6×10−9)和EPHA 1(GERAD+ P=3.4×10−4;包括ADGC meta-P =6.0×10−10)。这些发现支持了5个新的AD易感基因。
We sought to identify new susceptibility loci for Alzheimer’s disease (AD) through a staged association study (GERAD+) and by testing suggestive loci reported by the Alzheimer’s Disease Genetic Consortium (ADGC). First, we undertook a combined analysis of four genome-wide association datasets (Stage 1) and identified 10 novel variants with P≤1×10−5. These were tested for association in an independent sample (Stage 2). Three SNPs at two loci replicated and showed evidence for association in a further sample (Stage 3). Meta-analyses of all data provide compelling evidence that ABCA7 (meta-P 4.5×10−17; including ADGC meta-P=5.0×10−21) and the MS4A gene cluster (rs610932, meta-P=1.8×10−14; including ADGC meta-P=1.2×10−16; rs670139, meta-P=1.4×10−9; including ADGC meta-P=1.1×10−10) are novel susceptibility loci for AD. Second, we observed independent evidence for association for three suggestive loci reported by the ADGC GWAS, which when combined shows genome-wide significance: CD2AP (GERAD+ P=8.0×10−4; including ADGC meta-P=8.6×10−9), CD33 (GERAD+ P=2.2×10−4; including ADGC meta-P=1.6×10−9) and EPHA1 (GERAD+ P=3.4×10−4; including ADGC meta-P=6.0×10−10). These findings support five novel susceptibility genes for AD.
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发表时间: 2009-10
期刊: NATURE GENETICS
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