OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results
OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results
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DOI：
10.1002/pmic.200900037
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发表时间：
2009-07-01
期刊：
影响因子：
3.4
通讯作者：
Martens, Lennart
中科院分区：
文献类型：
--
作者：
Barsnes, Harald;Huber, Steffen;Martens, Lennart
蛋白质质谱鉴定是基于凝胶和无凝胶蛋白质组研究中的一项重要技术。开放质谱搜索算法（OMSSA）（http：//pubchem.ncbi.nlm.nih.gov/omssa）是一种开源搜索引擎，可用于识别这些实验中获得的MS/MS光谱。我们在这里介绍一个轻量级的、开放源代码的Java软件库OMSSA Parser（http：//code.google.com/p/omssa-parser），它将OMSSA omx结果文件解析成易于访问的、功能齐全的对象模型。此外，我们还提供了一些例子来说明我们的库的使用。
Protein identification by MS is an important technique in both gel-based and gel-free proteome studies. The Open Mass Spectrometry Search Algorithm (OMSSA) (http:// pubchem.ncbi.nlm.nih.gov/omssa) is an open-source search engine that can be used to identify MS/MS spectra acquired in these experiments. We here present a lightweight, open-source Java software library, OMSSA Parser (http://code.google.com/p/omssa-parser), which parses OMSSA omx result files into easy accessible and fully functional object models. In addition, we also provide examples illustrating the usage of our library.