Short read mapping for exome sequencing.

Short read mapping for exome sequencing.
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用于外显子组测序的短读长映射。

DOI:
10.1007/978-1-62703-514-9_6
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发表时间:
2013
影响因子:
--
通讯作者:
You
You
中科院分区:
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文献类型:
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作者:
Xueya Zhou;S. Bao;Binbin Wang;Xuegong Zhang;You

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将短读段映射到参考基因组通常是利用下一代测序技术的应用的先决条件。为此目的开发的十几种软件工具已被广泛使用。但在利用它们为下游分析构建计算管道时,仍存在许多实际问题。在这一章中,我们描述了我们实验室在外显子组测序研究中采用的读段映射程序,作为一个例子来说明这些实际细节。
Mapping short reads to the reference genome is very often the prerequisite for applications utilizing the next-generation sequencing technologies. A dozen of software tools developed for this purpose have been widely used. But many practical issues remained when utilizing them to build a computational pipeline for downstream analyses. In this chapter, we describe the read mapping procedures adopted in our lab for the exome sequencing studies as an example to illustrate those practical details.
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DOI: --
发表时间: 2011
期刊:
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作者:
Duhamel. M;Perillous. S;Epinat. JC;Cedrone. F;Englund. M;Ellerstrom. C;Hyllner. J;Hotta. A;Yamanaka. S;Balbirnie. E;Sourdive. D;Rochon. C;菅原貴征;吉田秀一,菅原貴征,兼子直
通讯作者: 吉田秀一,菅原貴征,兼子直