Visualizing Genomic Data Using Gviz and Bioconductor
Visualizing Genomic Data Using Gviz and Bioconductor
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DOI：
10.1007/978-1-4939-3578-9_16
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发表时间：
2016-01-01
期刊：
影响因子：
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通讯作者：
Ivanek, Robert
中科院分区：
文献类型：
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作者：
Hahne, Florian;Ivanek, Robert
Gviz软件包提供了一个灵活的框架，可以在各种不同的基因组注释功能的背景下可视化基因组数据。它紧密嵌入Bioconductor基因组学领域，与现有的基础设施很好地集成，但也提供了从Ensembl和UCSC等外部来源直接检索数据的功能，并支持大多数常用的注释文件类型。通过精心选择的默认设置，该软件包极大地促进了基因组位点的出版准备数字的产生，同时由于其丰富的定制选项，仍然保持高度的灵活性。
The Gviz package offers a flexible framework to visualize genomic data in the context of a variety of different genome annotation features. Being tightly embedded in the Bioconductor genomics landscape, it nicely integrates with the existing infrastructure, but also provides direct data retrieval from external sources like Ensembl and UCSC and supports most of the commonly used annotation file types. Through carefully chosen default settings the package greatly facilitates the production of publication-ready figures of genomic loci, while still maintaining high flexibility due to its ample customization options.