Evolutionary adaptation of the fly Pygo PHD finger toward recognizing histone H3 tail methylated at arginine 2.

Evolutionary adaptation of the fly Pygo PHD finger toward recognizing histone H3 tail methylated at arginine 2.
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DOI:
10.1016/j.str.2013.09.013
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发表时间:
2013-12-03
期刊:
影响因子:
5.7
通讯作者:
Bienz, Mariann
Bienz, Mariann
中科院分区:
生物学2区
文献类型:
--
作者:
Miller, Thomas C. R.;Mieszczanek, Juliusz;Jose Sanchez-Barrena, Maria;Rutherford, Trevor J.;Fiedler, Marc;Bienz, Mariann

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Pygo proteins promote Armadillo- and β-catenin-dependent transcription, by relieving Groucho-dependent repression of Wnt targets. Their PHD fingers bind histone H3 tail methylated at lysine 4, and to the HD1 domain of their Legless/BCL9 cofactors, linking Pygo to Armadillo/β-catenin. Intriguingly, fly Pygo orthologs exhibit a tryptophan > phenylalanine substitution in their histone pocket-divider which reduces their affinity for histones. Here, we use X-ray crystallography and NMR, to discover a conspicuous groove bordering this phenylalanine in the Drosophila PHD-HD1 complex—a semi-aromatic cage recognizing asymmetrically methylated arginine 2 (R2me2a), a chromatin mark of silenced genes. Our structural model of the ternary complex reveals a distinct mode of dimethylarginine recognition, involving a polar interaction between R2me2a and its groove, the structural integrity of which is crucial for normal tissue patterning. Notably, humanized fly Pygo derepresses Notch targets, implying an inherent Notch-related function of classical Pygo orthologs, disabled in fly Pygo, which thus appears dedicated to Wnt signaling. Coadapted mutations in fly Pygo PHD fingers alter their histone-binding surface A semi-aromatic groove in fly Pygo embeds dimethylated arginine 2 of histone H3 Structural integrity of the arginine 2 groove is required for tissue patterning Humanized Drosophila Pygo derepresses Notch targets Miller et al. show that coadapted mutations in the Drosophila Pygo PHD finger alter its histone-binding surface to contain a novel semi-aromatic groove that embeds asymmetrically methylated arginine 2 of the histone H3 tail, a chromatin mark of silenced genes.
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