TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions
TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions
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DOI：
10.1093/nar/27.1.293
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发表时间：
1999-01-01
影响因子：
14.9
通讯作者：
Brown, CM
中科院分区：
文献类型：
--
作者：
Dalphin, ME;Stockwell, PA;Brown, CM
TransTerm是mRNA序列和参数的数据库，通常用于检测翻译控制信号。TransTerm-98已经扩展到超过前几年，包括完整的编码序列和UTR，同时保留了关于编码序列起始密码子和终止密码子的原始小上下文。该数据库包含来自450多个物种的130，000多个非冗余编码序列和相关的非翻译区（UTR）。这包括12个原核生物和一个真核生物的完整基因组。几个编码序列参数是可用的：编码序列长度，Nc，GC 3和，当它是可计算的。密码子适应指数（CAI）。还包括密码子使用表以及起始和终止密码子上下文的总结。TransTerm-98既有一个带有WWW接口的关系数据库格式，也有一个平面文件格式，也可以通过Internet浏览器访问。TransTerm可在http://biochem.otago.ac.nz:800/Transterm/homepage.html上获得。
TransTerm is a database of mRNA sequences and parameters useful for detecting translational control signals in general. TransTerm-98 has been expanded beyond previous years to include full coding sequences and UTRs, while retaining the original small contexts about the coding sequence start- and stop-codons. The database contains more than 130 000 non-redundant coding sequences with associated untranslated regions (UTRs) from over 450 species. This includes the complete genomes of 12 prokaryotic and one eukaryotic organism. Several coding sequence parameters are available: coding sequence length, Nc, GC3 and, when it is computable. Codon Adaptation index (CAI). Codon usage tables and summaries of start- and stop-codon contexts are also included. TransTerm-98 has both a relational database form with a WWW interface and a flatfile format, also available by Internet browser. TransTerm is available at: http://biochem.otago.ac.nz:800/Transterm/homepage.html.