Development of a single-chain, quasi-dimeric zinc-finger nuclease for the selective degradation of mutated human mitochondrial DNA.

Development of a single-chain, quasi-dimeric zinc-finger nuclease for the selective degradation of mutated human mitochondrial DNA.
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DOI:
10.1093/nar/gkn313
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发表时间:
2008-07
影响因子:
14.9
通讯作者:
Klug A
Klug A
中科院分区:
生物学2区
文献类型:
--
作者:
Minczuk M;Papworth MA;Miller JC;Murphy MP;Klug A

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突变线粒体DNA (mtDNA)分子的选择性降解是一种潜在的策略,可以用野生型(wt) mtDNA分子重新填充细胞,从而减轻mtDNA疾病的线粒体功能缺陷。锌指核酸酶(ZFNs)是一种与锌指肽(ZFP)结合的核酸酶,可结合特定的DNA序列,可用于选择性降解特定的mtDNA序列。通常,在目标DNA序列上使用异二聚化的互补zfn对;然而,传统的zfn在我们的系统中是无效的。为了克服这个问题,我们将两个FokI核酸酶结构域通过柔性连接物连接到具有n端线粒体靶向序列的ZFP上,从而创建了单链ZFP。在这里,我们发现这些ZFNs在细胞中被有效地转运到线粒体中,并以序列特异性的方式结合mtDNA,区分两个12bp的长序列,这些序列只相差一个碱基对。由于它们的选择性结合,它们在与突变相邻的预测位点上切割dsDNA。当在含有突变mtDNA和wt mtDNA混合的异质细胞中表达时,这些ZFNs选择性地降解突变mtDNA,从而增加细胞中wt mtDNA分子的比例。因此,线粒体靶向单链ZFNs是治疗mtDNA疾病的一种有希望的候选方法。
The selective degradation of mutated mitochondrial DNA (mtDNA) molecules is a potential strategy to re-populate cells with wild-type (wt) mtDNA molecules and thereby alleviate the defective mitochondrial function that underlies mtDNA diseases. Zinc finger nucleases (ZFNs), which are nucleases conjugated to a zinc-finger peptide (ZFP) engineered to bind a specific DNA sequence, could be useful for the selective degradation of particular mtDNA sequences. Typically, pairs of complementary ZFNs are used that heterodimerize on the target DNA sequence; however, conventional ZFNs were ineffective in our system. To overcome this, we created single-chain ZFNs by conjugating two FokI nuclease domains, connected by a flexible linker, to a ZFP with an N-terminal mitochondrial targeting sequence. Here we show that these ZFNs are efficiently transported into mitochondria in cells and bind mtDNA in a sequence-specific manner discriminating between two 12-bp long sequences that differ by a single base pair. Due to their selective binding they cleave dsDNA at predicted sites adjacent to the mutation. When expressed in heteroplasmic cells containing a mixture of mutated and wt mtDNA these ZFNs selectively degrade mutated mtDNA, thereby increasing the proportion of wt mtDNA molecules in the cell. Therefore, mitochondria-targeted single-chain ZFNs are a promising candidate approach for the treatment of mtDNA diseases.
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