AFLPDAT: a collection of R functions for convenient handling of AFLP data
AFLPDAT: a collection of R functions for convenient handling of AFLP data
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DOI：
10.1111/j.1471-8286.2006.01380.x
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发表时间：
2006-09-01
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影响因子：
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通讯作者：
Ehrich, Dorothee
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文献类型：
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作者：
Ehrich, Dorothee
AFLPDAT是R函数的集合，便于处理显性基因型数据。它将数据从标准的tab分隔表转换为以下程序的输入格式：ARLEQUIN， STRUCTURE， TREECON， PAUP和HICKORY。此外，它还计算了每个群体中多态性标记的比例，并基于标记间自举的置信区间估计了个体间两两差异的平均比例，从而估计了基因多样性。它还生成了标记频率的汇总表，以及每个人群中标记的存在或不存在。AFLPDAT可从http://www.nhm.uio.no/ncb/下载。
AFLPDAT is a collection of R functions that facilitates the handling of dominant genotypic data. It converts data from a standard tab-separated table to the input formats of the following programs: ARLEQUIN, STRUCTURE, TREECON, PAUP and HICKORY. In addition, it calculates the proportion of polymorphic markers in each population, and estimates gene diversity as the average proportion of pairwise differences between individuals with confidence intervals based on bootstrapping across markers. It also produces summary tables of marker frequencies and the presence or absence of markers in each population. AFLPDAT can be downloaded from http://www.nhm.uio.no/ncb/.