Software Tools for Interoperable Taxonomic Databases: The ICTVdB Prototype
用于可互操作分类数据库的软件工具:ICTVdB 原型
基本信息
- 批准号:9808037
- 负责人:
- 金额:$ 36.79万
- 依托单位:
- 依托单位国家:美国
- 项目类别:Standard Grant
- 财政年份:1998
- 资助国家:美国
- 起止时间:1998-09-01 至 2000-10-31
- 项目状态:已结题
- 来源:
- 关键词:
项目摘要
This project will research new tools for improved data structures and management of a major biological database in an effort to standardize nomenclature, conceptual information and semantic content, all key problems of community databases. The prototype system developed earlier will lead to a fully evolved, distributed system during this phase. The Universal Virus Database (ICTVdB), an advanced, biological database maintained for the International Committee on the Taxonomy of Viruses (ICTV), serves as the prototype. An international team will collaborate to develop and test software for functional integration and web-based access to two widely used, stand- alone special purpose software tools that have been independently developed to handle taxonomic data. The tools to be refined and integrated for ICTVdB are DELTA (Description Language for Taxonomy) and Micro-IS (Microbial Information System). Integration will preserve the unique features of each, while providing the widest capabilities for disparate requirements of various user groups, through a conversion program that automatically translates DELTA formatted data to Micro-IS format. DELTA, with its supporting suite of applications, facilitates both the building oftaxonomic descriptions in natural language and the identification of unknown biological entities by matching with known entities. Micro-IS is designed for the storage, management, and analysis of biological data via an object oriented database engine. The resultant tools will be applicable to any biological database that seeks to make the most effective use of information from a multitude of levels. The ultimate goal of this project is to provide software tools with common standards to be used as Windows 95/NT desktop and/or web-based applications. These will convert ICTVdB from a reference resource to a research tool for studies of phylogeny and evolutionary relationships. The tools will also enhance access to a well-curated community database in v irology for client use and facilitate routine submission of emerging data. All of the products of this research project will be available to investigators in other fields for existing applications and further enhancements. Abslract July 25, 1998 I
该项目将研究改进数据结构和管理主要生物数据库的新工具,以努力使命名、概念信息和语义内容标准化,这是社区数据库的所有关键问题。早期开发的原型系统将在此阶段形成一个完全演化的分布式系统。世界病毒数据库(ICTVDB)是为国际病毒分类委员会(ICTV)维护的一个先进的生物数据库,它是原型。一个国际团队将合作开发和测试软件,以实现功能集成和基于网络的访问两个广泛使用的独立专用软件工具,这两个工具是独立开发的,用于处理分类数据。ICTVDB需要改进和集成的工具是Delta(分类学描述语言)和Micro-IS(微生物信息系统)。集成将保留各自的独特功能,同时通过自动将Delta格式的数据转换为Micro-IS格式的转换程序,为不同用户群体的不同需求提供最广泛的能力。Delta及其支持的应用程序套件既促进了自然语言分类描述的构建,又通过与已知实体的匹配来识别未知生物实体。Micro-IS旨在通过面向对象的数据库引擎存储、管理和分析生物数据。由此产生的工具将适用于寻求最有效地利用来自多个层面的信息的任何生物数据库。该项目的最终目标是提供具有通用标准的软件工具,用作Windows 95/NT桌面和/或基于网络的应用程序。这些将把ICTVDB从一个参考资源转变为研究系统发展和进化关系的研究工具。这些工具还将加强对病毒学中精心策划的社区数据库的访问,以供客户使用,并便利例行提交新数据。该研究项目的所有产品将提供给其他领域的研究人员,用于现有的应用和进一步的改进。1998年7月25日第一次
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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Lois Blaine其他文献
A Data Bank on Cloned Cell Lines and Their Immunoreactive Products
克隆细胞系及其免疫反应性产物数据库
- DOI:
10.1038/nbt0484-338 - 发表时间:
1984-04-01 - 期刊:
- 影响因子:41.700
- 作者:
Lois Blaine - 通讯作者:
Lois Blaine
Lois Blaine的其他文献
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{{ truncateString('Lois Blaine', 18)}}的其他基金
SGER: Development of a Data Exchange Format for Species Related Data: Feasibility Study
SGER:物种相关数据的数据交换格式的开发:可行性研究
- 批准号:
0117942 - 财政年份:2001
- 资助金额:
$ 36.79万 - 项目类别:
Standard Grant
Workshop on U.S.-Australia Interactions in Bioinformatics, Being held July 10-12, 2000 in Manassas Virginia
美国-澳大利亚生物信息学互动研讨会,2000 年 7 月 10 日至 12 日在弗吉尼亚州马纳萨斯举行
- 批准号:
0091457 - 财政年份:2000
- 资助金额:
$ 36.79万 - 项目类别:
Standard Grant
Software Tools for Interoperable Taxonomic Databases
可互操作分类数据库的软件工具
- 批准号:
9631047 - 财政年份:1996
- 资助金额:
$ 36.79万 - 项目类别:
Standard Grant
Planning and Preliminary Design of a World Virus Database (ICTVdb)
世界病毒数据库(ICTVdb)的规划和初步设计
- 批准号:
9505661 - 财政年份:1995
- 资助金额:
$ 36.79万 - 项目类别:
Standard Grant
Data Integration for Improved Analysis of Microbial Stain Characteristics
用于改进微生物污渍特征分析的数据集成
- 批准号:
9107464 - 财政年份:1991
- 资助金额:
$ 36.79万 - 项目类别:
Standard Grant
Workshop on "Standardized Coding of Virus Characteristics;" Rockville, Maryland: March 1990
“病毒特征标准化编码”研讨会;
- 批准号:
8920793 - 财政年份:1990
- 资助金额:
$ 36.79万 - 项目类别:
Standard Grant
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